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AT1G28150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22274653 (2012): plastid
  • PMID:16461379 (2006): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 96 Blast hits to 96 proteins in 44 species: Archae - 0; Bacteria - 56; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2VXeggNOG:ENOG41122GHEMBL:AC021044EMBL:AC069471EMBL:AY085247EMBL:AY126998EMBL:AY143794
EMBL:CP002684EnsemblPlants:AT1G28150EnsemblPlants:AT1G28150.1entrez:839709GeneID:839709Genevisible:Q9FZ89GO:GO:0010287
Gramene:AT1G28150.1hmmpanther:PTHR35996hmmpanther:PTHR35996:SF1HOGENOM:HOG000240923InParanoid:Q9FZ89KEGG:ath:AT1G28150OMA:SKSSCFN
PaxDb:Q9FZ89Pfam:Q9FZ89PhylomeDB:Q9FZ89PIR:D86407PRIDE:Q9FZ89PRO:PR:Q9FZ89Proteomes:UP000006548
RefSeq:NP_564301.1STRING:3702.AT1G28150.1TAIR:AT1G28150UniGene:At.27970UniProt:Q9FZ89
Coordinates (TAIR10) chr1:-:9835122..9835842
Molecular Weight (calculated) 13583.10 Da
IEP (calculated) 4.29
GRAVY (calculated) -0.13
Length 123 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFVLICTCP PSSGVVVSQL HHHQFSAGVK SNELWFRPTR RTLISKSSCF NLPQEPILSE ALKEPIAFLG GMFAGLLRLD LNEEPLKDWV TRTVEASGIT
101: EEEVDADGVV SNDEDSPQQI EIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)