suba logo
AT1G28135.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.949
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:BT010779EMBL:BT014675EMBL:CP002684EnsemblPlants:AT1G28135EnsemblPlants:AT1G28135.1entrez:839707GeneID:839707
Gramene:AT1G28135.1IntAct:Q6IDD0KEGG:ath:AT1G28135Proteomes:UP000006548RefSeq:NP_174135.1STRING:3702.AT1G28135.1TAIR:AT1G28135
UniGene:At.48243UniProt:Q6IDD0
Coordinates (TAIR10) chr1:+:9829332..9829487
Molecular Weight (calculated) 5780.06 Da
IEP (calculated) 12.31
GRAVY (calculated) -0.85
Length 51 amino acids
Sequence (TAIR10)
(BLAST)
1: MELITLLLAV LPLTPTVDRN RNVSRQSKPR AQARKPGKRE RAHSSKVRSS E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)