AT1G28090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polynucleotide adenylyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 9340 Blast hits to 9332 proteins in 2600 species: Archae - 2; Bacteria - 6572; Metazoa - 129; Fungi - 227; Plants - 128; Viruses - 8; Other Eukaryotes - 2274 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9795826..9798891 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61150.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.10 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||
| Length | 541 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFNKLSSMAY GSFGVSSKAL VYCRPCYGSI RDLPFSLRTS TIGHCGCVGA IAAPRNVVKP RKEESRDFSG ARGSNKDKSM PWKKLDANEF GIQRSMIPDS 101: TRMVLNKLKK KGFQVYLVGG CVRDLILDRI PKDFDVITTA ELKEVRKVFP GCQIVGRRFP ICHVYVDDII IEVSSFSTSA RTGKAPNKSF RRPAGCDERD 201: YIRWKNCLQR DFTVNGLMFD PSENVVYDYI GGVEDLRNSK VRTVSAANLS FVEDTARILR AIRIAARLGF SLTKDVAISV KELSSSLLRL DPSRIRMEIN 301: YMLAYGSAEA SLRLLWRFGL MEILLPIQAS YLVSQGFRRR DGRSNMLLSL FRNLDRLVAP DRPCSEFLWI GILAFHKALV DQPRDPTVVA SFCLAIYSEV 401: SLSEAIAIAR SNSKQHNSHF QELSSPEKDT ADSESKISQQ VIKLAESIRS AARKLNNRDY IANAMSKYPQ APGSDMVFLS RLMLERVEKM FGNVRRKGNQ 501: ERDDVPSLER RINYKSLALG DFHETRRVFA RIVFDTIYPL A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)