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AT1G28060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pre-mRNA-splicing factor 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pre-mRNA-splicing factor 3; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: Pre-mRNA-splicing factor 3 (TAIR:AT3G55930.1); Has 22923 Blast hits to 12760 proteins in 707 species: Archae - 18; Bacteria - 1085; Metazoa - 11525; Fungi - 3053; Plants - 1999; Viruses - 93; Other Eukaryotes - 5150 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQV0eggNOG:KOG2769EMBL:AC069471EMBL:AY126993EMBL:CP002684EnsemblPlants:AT1G28060EnsemblPlants:AT1G28060.1
entrez:839699GeneID:839699GO:GO:0000398GO:GO:0046540Gramene:AT1G28060.1hmmpanther:PTHR14212InterPro:IPR010541
InterPro:IPR013881InterPro:IPR027104KEGG:ath:AT1G28060KO:K12843ncoils:CoilOMA:KGHEGGGPANTHER:PTHR14212
Pfam:PF06544Pfam:PF08572PhylomeDB:Q9C7E7PIR:C86406PRO:PR:Q9C7E7Proteomes:UP000006548Reactome:R-ATH-72163
RefSeq:NP_174127.1SMR:Q9C7E7STRING:3702.AT1G28060.1TAIR:AT1G28060UniGene:At.27810UniProt:Q9C7E7
Coordinates (TAIR10) chr1:+:9779167..9782486
Molecular Weight (calculated) 88642.40 Da
IEP (calculated) 10.10
GRAVY (calculated) -1.07
Length 786 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKERYSRSH RDDRDRDSSP DHSPQREGGR RRDRDVDSKR RDSDHYRSSR RGDREDERDR TKDRRGRSVE RGEREGSRDR EKHHHERSHE GSKEKESRSK
101: RKDREEENGA RDGKKKSRFA DGNGERRSRF EDVAIEVENK DAQVSEGSGA TNPTSGVTMG ASTYSSIPSE ASAAPSQTLL TKVSSISTTD ENKASVVRSH
201: EVPGKSSTDG RPLSTAGKSS ANLPLDSSAL AAKARKALQL QKGLADRLKN LPLLKKATKP TSEGSPHTRV PPSTTTPAVS TGTSFASTLP HTGLAGFGSI
301: ANIEAVKRAQ ELAANMGFHQ DREFAPVINL FPGQAPSDMT VAQRPEKPPV LRVDALGREI DEHGNVISVT KPSNLSTLKV NINKKKKDAF QILKPQLEAD
401: LKENPYFDTR MGIDEKKILR PKRMSFQFVE EGKWTRDAEN LKFKSHFGEA KAKELKVKQA QLAKANDDIN PNLIEVSERV PRKEKPKEPI PDVEWWDANV
501: LTNGEYGEIT DGTITESHLK IEKLTHYIEH PRPIEPPAEA APPPPQPLKL TKKEQKKLRT QRRLAKEKEK QEMIRQGLLE PPKAKVKMSN LMKVLGSEAT
601: QDPTKLEKEI RTAAAEREQA HTDRNAARKL TPAEKREKKE RKLFDDPTTV ETIVSVYKIK KLSHPKTRFK VEMNARENRL TGCSVMTDEM SVVVVEGKSK
701: AIKRYGKLMM KRINWEEAER KEGNEDEEEE VNGGNKCWLV WQGSIGKPSF HRFHVHECVT ESTAKKVFMD AGVVHYWDLA VNYSDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)