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AT1G28050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : B-box type zinc finger protein with CCT domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT2G33500.2); Has 3090 Blast hits to 2261 proteins in 129 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 2990; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Protein Annotations
BioGrid:24933eggNOG:ENOG410IHP9eggNOG:ENOG410Y966EMBL:AC069471EMBL:AY037206EMBL:BT002681EMBL:CP002684
EnsemblPlants:AT1G28050EnsemblPlants:AT1G28050.1entrez:839698GeneID:839698Genevisible:Q9C7E8GO:GO:0003700GO:GO:0005634
GO:GO:0006355GO:GO:0008270Gramene:AT1G28050.1hmmpanther:PTHR31717hmmpanther:PTHR31717:SF3HOGENOM:HOG000243233InParanoid:Q9C7E8
IntAct:Q9C7E8InterPro:IPR000315InterPro:IPR010402KEGG:ath:AT1G28050ncoils:CoilOMA:DNCGNEPPaxDb:Q9C7E8
Pfam:PF06203Pfam:Q9C7E8Pfscan:PS50119Pfscan:PS51017PhylomeDB:Q9C7E8PIR:B86406PRIDE:Q9C7E8
PRO:PR:Q9C7E8PROSITE:PS50119PROSITE:PS51017ProteinModelPortal:Q9C7E8Proteomes:UP000006548RefSeq:NP_174126.1SMART:SM00336
STRING:3702.AT1G28050.1TAIR:AT1G28050UniGene:At.19754UniProt:Q9C7E8
Coordinates (TAIR10) chr1:-:9775768..9777657
Molecular Weight (calculated) 47608.50 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.72
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSERVPCD FCGERTAVLF CRADTAKLCL PCDQQVHTAN LLSRKHVRSQ ICDNCGNEPV SVRCFTDNLI LCQECDWDVH GSCSVSDAHV RSAVEGFSGC
101: PSALELAALW GLDLEQGRKD EENQVPMMAM MMDNFGMQLD SWVLGSNELI VPSDTTFKKR GSCGSSCGRY KQVLCKQLEE LLKSGVVGGD GDDGDRDRDC
201: DREGACDGDG DGEAGEGLMV PEMSERLKWS RDVEEINGGG GGGVNQQWNA TTTNPSGGQS SQIWDFNLGQ SRGPEDTSRV EAAYVGKGAA SSFTINNFVD
301: HMNETCSTNV KGVKEIKKDD YKRSTSGQVQ PTKSESNNRP ITFGSEKGSN SSSDLHFTEH IAGTSCKTTR LVATKADLER LAQNRGDAMQ RYKEKRKTRR
401: YDKTIRYESR KARADTRLRV RGRFVKASEA PYP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)