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AT1G27970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nuclear transport factor 2B
Curator
Summary (TAIR10)
Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport.
Computational
Description (TAIR10)
nuclear transport factor 2B (NTF2B); FUNCTIONS IN: protein transporter activity, Ran GTPase binding; INVOLVED IN: nucleocytoplasmic transport, protein import into nucleus; LOCATED IN: nuclear envelope, intracellular, nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2A (TAIR:AT1G27310.1); Has 1018 Blast hits to 1018 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 232; Plants - 204; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Protein Annotations
BioGrid:24925eggNOG:ENOG4111QUXeggNOG:KOG2104EMBL:AC069471EMBL:BT025598EMBL:CP002684EnsemblPlants:AT1G27970
EnsemblPlants:AT1G27970.1entrez:839690ExpressionAtlas:Q9C7F5Gene3D:3.10.450.50GeneID:839690Genevisible:Q9C7F5GO:GO:0005737
GO:GO:0015031hmmpanther:PTHR12612HOGENOM:HOG000197024InParanoid:Q9C7F5InterPro:IPR002075InterPro:IPR018222InterPro:IPR032710
PaxDb:Q9C7F5Pfam:PF02136Pfam:Q9C7F5Pfscan:PS50177PhylomeDB:Q9C7F5PIR:B86405PRIDE:Q9C7F5
PRO:PR:Q9C7F5PROSITE:PS50177ProteinModelPortal:Q9C7F5Proteomes:UP000006548RefSeq:NP_174118.1SMR:Q9C7F5STRING:3702.AT1G27970.2
SUPFAM:SSF54427TAIR:AT1G27970tair10-symbols:NTF2BUniGene:At.40966UniProt:Q9C7F5
Coordinates (TAIR10) chr1:+:9746921..9747787
Molecular Weight (calculated) 14002.70 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.06
Length 126 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQMDPDAVS KAFVEHYYST FDTNRVGLAG LYQEASMLTF EGQKIQGVQS IVAKLTSLPF QQCKHHISTV DCQPSGPASG MLVFVSGNLQ LAGEEHALKF
101: SQMFHLMPTP QGSFYVFNDI FRLNYA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)