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AT1G27940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.853
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-glycoprotein 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-glycoprotein 13 (PGP13); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 14 (TAIR:AT1G28010.1); Has 859453 Blast hits to 396267 proteins in 4182 species: Archae - 14855; Bacteria - 669138; Metazoa - 18079; Fungi - 12603; Plants - 9342; Viruses - 61; Other Eukaryotes - 135375 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G27940-MONOMERBioGrid:24922eggNOG:COG1132eggNOG:KOG0055EMBL:AC069471EMBL:CP002684EnsemblPlants:AT1G27940
EnsemblPlants:AT1G27940.1entrez:839687Gene3D:3.40.50.300GeneID:839687Genevisible:Q9C7F8GO:GO:0005524GO:GO:0016021
GO:GO:0042626GO:GO:0055085Gramene:AT1G27940.1hmmpanther:PTHR24221hmmpanther:PTHR24221:SF235InParanoid:Q9C7F8InterPro:IPR003439
InterPro:IPR003593InterPro:IPR011527InterPro:IPR017871InterPro:IPR027417iPTMnet:Q9C7F8KEGG:ath:AT1G27940KO:K05658
MINT:MINT-8059137ncoils:CoilOMA:FLAFCSYPaxDb:Q9C7F8Pfam:PF00005Pfam:PF00664Pfam:Q9C7F8
Pfscan:PS50893Pfscan:PS50929PhylomeDB:Q9C7F8PIR:G86404PRIDE:Q9C7F8PRO:PR:Q9C7F8PROSITE:PS00211
PROSITE:PS50893PROSITE:PS50929ProteinModelPortal:Q9C7F8Proteomes:UP000006548RefSeq:NP_174115.1scanprosite:PS00211SMART:SM00382
SMR:Q9C7F8STRING:3702.AT1G27940.1SUPFAM:SSF52540SUPFAM:SSF90123TAIR:AT1G27940tair10-symbols:PGP13TMHMM:TMhelix
UniGene:At.51796UniProt:Q9C7F8
Coordinates (TAIR10) chr1:-:9733597..9738129
Molecular Weight (calculated) 135784.00 Da
IEP (calculated) 9.52
GRAVY (calculated) 0.04
Length 1245 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDNTERSSNG NIQAETEAKE EKKNIKKESV SLMGLFSAAD KLDYFLMLLG GLGACIHGAT LPLFFVFFGK MLDSLGNLST DPKAISSRVS QNALYLVYLG
0101: LVNFVSAWIG VSCWMQTGER QTARLRINYL KSILAKDITF FDTEARDSNL IFHISSDAIL VQDAIGDKTD HVLRYLSQFI AGFVIGFLSV WQLTLLTLGV
0201: VPLIAIAGGG YAIVMSTISE KSETAYADAG KVAEEVMSQV RTVYAFVGEE KAVKSYSNSL KKALKLGKRS GLAKGLGVGL TYSLLFCAWA LLLWYASLLV
0301: RHGKTNGAKA FTTILNVIFS GFALGQAAPS LSAIAKGRVA AANIFRMIGN NNSESSQRLD EGTTLQNVAG RIEFQKVSFA YPSRPNMVFE NLSFTIRSGK
0401: TFAFVGPSGS GKSTIISMVQ RFYEPNSGEI LLDGNDIKSL KLKWFREQLG LVSQEPALFA TTIASNILLG KENANMDQII EAAKAANADS FIKSLPNGYN
0501: TQVGEGGTQL SGGQKQRIAI ARAVLRNPKI LLLDEATSAL DAESEKIVQQ ALDNVMEKRT TIVVAHRLST IRNVDKIVVL RDGQVRETGS HSELMLRGGD
0601: YATLVNCQET EPQENSRSIM SETCKSQAGS SSSRRVSSSR RTSSFRVDQE KTKNDDSKKD FSSSSMIWEL IKLNSPEWPY ALLGSIGAVL AGAQTPLFSM
0701: GIAYVLTAFY SPFPNVIKRD VEKVAIIFAG AGIVTAPIYL LQHYFYTLMG ERLTSRVRLS LFSAILSNEI GWFDLDENNT GSLTSILAAD ATLVRSALAD
0801: RLSTIVQNLS LTVTALALAF FYSWRVAAVV TACFPLLIAA SLTEQLFLKG FGGDYTRAYS RATSVAREAI ANIRTVAAYG AEKQISEQFT CELSKPTKNA
0901: FVRGHISGFG YGLSQFLAFC SYALGLWYVS VLINHKETNF GDSIKSFMVL IVTAFSVSET LALTPDIVKG TQALGSVFRV LHRETKISPD QPNSRMVSQV
1001: KGDIEFRNVS FVYPTRPEID IFKNLNLRVS AGKSLAVVGP SGSGKSTVIG LIMRFYDPSN GNLCIDGQDI KTLNLRSLRK KLALVQQEPA LFSTTIYENI
1101: KYGNENASEA EIMEAAKAAN AHEFIIKMEE GYKTHAGDKG VQLSGGQKQR VAIARAVLKD PSVLLLDEAT SALDTSSEKL VQEALDKLMK GRTTVLVAHR
1201: LSTIRKADTV AVLHKGRVVE KGSHRELVSI PNGFYKQLTS LQEVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)