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AT1G27910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.989
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant U-box 45
Curator
Summary (TAIR10)
Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
Computational
Description (TAIR10)
plant U-box 45 (PUB45); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G24330.1); Has 2726 Blast hits to 2661 proteins in 214 species: Archae - 0; Bacteria - 25; Metazoa - 192; Fungi - 159; Plants - 2120; Viruses - 3; Other Eukaryotes - 227 (source: NCBI BLink).
Protein Annotations
BioGrid:24919EC:6.3.2.-eggNOG:ENOG410ITMPeggNOG:ENOG410XQ5KEMBL:AC069471EMBL:AK230080EMBL:AY094469
EMBL:BT002721EMBL:CP002684EnsemblPlants:AT1G27910EnsemblPlants:AT1G27910.1entrez:839684Gene3D:1.25.10.10Gene3D:3.30.40.10
GeneID:839684Genevisible:Q9C7G1GO:GO:0004842GO:GO:0016567GO:GO:0016874GO:GO:0070696Gramene:AT1G27910.1
hmmpanther:PTHR22849hmmpanther:PTHR22849:SF8HOGENOM:HOG000082565InParanoid:Q9C7G1InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989
InterPro:IPR013083InterPro:IPR016024KEGG:ath:AT1G27910OMA:DDKCIAPPaxDb:Q9C7G1Pfam:PF04564Pfam:Q9C7G1
Pfscan:PS50176Pfscan:PS51698PhylomeDB:Q9C7G1PIR:D86404PRIDE:Q9C7G1PRO:PR:Q9C7G1PROSITE:PS50176
PROSITE:PS51698ProteinModelPortal:Q9C7G1Proteomes:UP000006548RefSeq:NP_174112.1SMART:SM00185SMART:SM00504SMR:Q9C7G1
STRING:3702.AT1G27910.1SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT1G27910tair10-symbols:ATPUB45tair10-symbols:PUB45UniGene:At.22435
UniPathway:UPA00143UniProt:Q9C7G1
Coordinates (TAIR10) chr1:-:9720962..9723975
Molecular Weight (calculated) 85580.50 Da
IEP (calculated) 5.26
GRAVY (calculated) -0.23
Length 768 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVNEVEENF FAPGDAKLHG KMCNALSVIY CKIMSIFPSL EAARPRSKSG IQALCSLHVV LEKVKNILRH CTESSKLYLA ITGDSVVLKF EKAKSSLTDS
101: LRRVEDIVQQ SIGSQLLEIL MELENTEFSL DPAEKEIGDQ IIGLLQQGGN FESSSDNNEL EVFHQAATRL GITSSRAALT ERRCLKKLIE RARMEDDKRK
201: ESIVAYLLHL MRKYSKLFRS EIWDDNDSQG SSSLPCSPTI QGSIDDAHGR AFDRQLSKLS SFNFRSCNNN RRSSQMSVPP EELRCPISLQ LMYDPVIIAS
301: GQTYERICIE KWFSDGHNTC PKTHQQLSHL CLTPNYCVKA LISSWCEQNG VQVPDGPPES LDLNYWRLAL SVSESTDTRS AKRVGSCKLK DVKVVPLEES
401: GTIKEEACES EYQEDQVTLV ERCTELLTTL TDVDTLRKKC RVVEQIRVLL KDDEEARILM GENGCVEALL QFLGSALNEN NASAQKVGAM ALFNLAVDNN
501: RNKELMLASG IIPLLEEMLC NPHSHGSVTA IYLNLSCLEE AKPVIGSSLA VPFMVNLLWT ETEVQCKVDA LHSLFHLSTY PPNIPCLLSA DLVNALQSLT
601: ISDEQRWTEK SLAVLLNLVL NEAGKDEMVS APSLVSNLCT ILDTGEPNEQ EQAVSLLLIL CNHSEICSEM VLQEGVIPSL VSISVNGTQR GRERAQKLLT
701: LFRELRQRDQ THLTEPQHTE VTSPEDGFSV ASAAVTETKP QCKSASRKKM GRAFSFLWKS KSFSVYQC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)