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AT1G27760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : interferon-related developmental regulator family protein / IFRD protein family
Curator
Summary (TAIR10)
Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.
Computational
Description (TAIR10)
SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator, N-terminal (InterPro:IPR007701), Interferon-related developmental regulator, C-terminal (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 353 Blast hits to 353 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 61; Plants - 99; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
DNASU:839669eggNOG:ENOG410XSIZeggNOG:KOG2842EMBL:AF361609EMBL:AF428281EMBL:AY078052EMBL:CP002684
EnsemblPlants:AT1G27760EnsemblPlants:AT1G27760.1entrez:839669ExpressionAtlas:Q9ASX8Gene3D:1.25.10.10GeneID:839669Gramene:AT1G27760.1
hmmpanther:PTHR12354hmmpanther:PTHR12354:SF1HOGENOM:HOG000238910InterPro:IPR006921InterPro:IPR007701InterPro:IPR011989InterPro:IPR016024
KEGG:ath:AT1G27760Pfam:PF04836Pfam:PF05004PhylomeDB:Q9ASX8Proteomes:UP000006548RefSeq:NP_564294.1STRING:3702.AT1G27760.3
SUPFAM:SSF48371TAIR:AT1G27760tair10-symbols:ATSAT32tair10-symbols:SAT32UniGene:At.24900UniProt:Q9ASX8
Coordinates (TAIR10) chr1:+:9668895..9671322
Molecular Weight (calculated) 48121.70 Da
IEP (calculated) 6.75
GRAVY (calculated) -0.26
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRKSQRKNA TMFDSDDDTS SVSSSSTMPS ERLLNPGMDE VTVLKDALLD QSLDALYEKR EQALATIVDA FNSDLQYEFV EKKFATLLHQ CLHCTKKGST
101: KETSLATHVI GLLALTVGLG DHAQEVLEES VTPLSQALKS GREILKITSI LECLAVITFV GGNDPEQTEK SMQIIWQMIH PKLGSNVVAT KPSPAVISAV
201: VSSWAFLLTT VDRWTLGPKI FQETVTYLST LLEKDDRSVR IAAGEALAVI YELGTLEKFA AEVKGSANGS VKEGGVSQEA LMHMHGLKAK VTKQVRELSV
301: EAGGKGSAKK DLNTQRNLFK DLVEFLEDGY APETSTKVGG DYLQTSTWYQ MIQLNYLKHF LGGGFIKHMQ ENEFLHDVFS FTPKKIGGGK LSNDEKRLFK
401: SPNSALNKAR TQFLAKQRML AKNMNVGHYA ATAMEEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)