AT1G27720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TBP-associated factor 4B | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TBP-associated factor 4B (TAF4B); FUNCTIONS IN: transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID component TAF4 (InterPro:IPR007900), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: TBP-associated factor 4 (TAIR:AT5G43130.1); Has 801 Blast hits to 726 proteins in 155 species: Archae - 1; Bacteria - 21; Metazoa - 244; Fungi - 130; Plants - 81; Viruses - 2; Other Eukaryotes - 322 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9643351..9647376 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80645.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.96 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 720 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLSIVKLLE EDEEVDSKHS EDDLQMFQDS LIRDIEGSNL KSINNTTGNE SEKPQPRYMK LQKMSSKETP WVEKTVDPVN HNLRLARVTD LLRTVVDHQP 101: GKKTHCLNLH YKLKRKELTM EEFMRQLRDL VGDQIIRSVI SQLPQLKPGN MGIKVPGRSN HDKVSKSAEF TAQESDPREV HVNQLSSTTS GTLNSSTTVQ 201: GLNKHPEQHM QLPSSSFHMD TKSGSLNPYP GTNVTSPGSS SRAKLPDFQH RENNQNVGIA SVGGPTKSTI NMTTVPKFER PTFVNGPSRV QDGPISDFPK 301: NSSFPLYSAP WQGSVTKDHT VGPSSSVIHV EHKLIDQSFE QAHKPRYLVQ QGVTNVPLKQ KNAIPISSND DLEKQSSKMG LFTSTTSASS VFPSMTTQLD 401: SSTMVNMPAP SETIPKIANV TVTPKMPSVG QKKPLEALGS SLPPSRKKQK ICGTSSDESI EKFNDVTAVS GINLREEEKQ LLDSGPKKND RVSKAYRRLV 501: HGEEERTLLQ KIPLQRKLTE IMGKSGLKHI DHDVERCLSL CVEERMRGLL FNIIRISKQR TDAEKCRNRT FITSDIRKEI NEMNQKVKEE WEKKHSGEEK 601: NKENDTEKED QRSNEVKANK KDEDKERAKA ANVAVRAAVG GDDRFSKWKL MAEARQRSSP GPGRNSKKLS GGTQFGKNQG LPKVVRSISV KDVIAVVEKE 701: PQMSRSTLLY RVYNRICSDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)