suba logo
AT1G27720.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TBP-associated factor 4B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TBP-associated factor 4B (TAF4B); FUNCTIONS IN: transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID component TAF4 (InterPro:IPR007900), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: TBP-associated factor 4 (TAIR:AT5G43130.1); Has 801 Blast hits to 726 proteins in 155 species: Archae - 1; Bacteria - 21; Metazoa - 244; Fungi - 130; Plants - 81; Viruses - 2; Other Eukaryotes - 322 (source: NCBI BLink).
Protein Annotations
BioGrid:24900eggNOG:ENOG410XQS6eggNOG:KOG2341EMBL:AC012375EMBL:AY457043EMBL:CP002684EnsemblPlants:AT1G27720
EnsemblPlants:AT1G27720.1entrez:839665Gene3D:1.10.20.10GeneID:839665Genevisible:Q6SJR1GO:GO:0005669GO:GO:0006352
GO:GO:0006355GO:GO:0009506Gramene:AT1G27720.1hmmpanther:PTHR15138hmmpanther:PTHR15138:SF14HOGENOM:HOG000083172IntAct:Q6SJR1
InterPro:IPR007900InterPro:IPR009072InterPro:IPR022003iPTMnet:Q6SJR1KEGG:ath:AT1G27720KO:K03129ncoils:Coil
OMA:LDSSTMVPaxDb:Q6SJR1Pfam:PF05236Pfam:PF12174Pfam:Q6SJR1PhylomeDB:Q6SJR1PIR:A86402
PRIDE:Q6SJR1PRO:PR:Q6SJR1ProteinModelPortal:Q6SJR1Proteomes:UP000006548RefSeq:NP_174093.3SMR:Q6SJR1STRING:3702.AT1G27720.1
TAIR:AT1G27720tair10-symbols:TAF4tair10-symbols:TAF4BUniGene:At.41019UniGene:At.66874UniProt:Q6SJR1
Coordinates (TAIR10) chr1:-:9643351..9647376
Molecular Weight (calculated) 80645.80 Da
IEP (calculated) 9.96
GRAVY (calculated) -0.82
Length 720 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLSIVKLLE EDEEVDSKHS EDDLQMFQDS LIRDIEGSNL KSINNTTGNE SEKPQPRYMK LQKMSSKETP WVEKTVDPVN HNLRLARVTD LLRTVVDHQP
101: GKKTHCLNLH YKLKRKELTM EEFMRQLRDL VGDQIIRSVI SQLPQLKPGN MGIKVPGRSN HDKVSKSAEF TAQESDPREV HVNQLSSTTS GTLNSSTTVQ
201: GLNKHPEQHM QLPSSSFHMD TKSGSLNPYP GTNVTSPGSS SRAKLPDFQH RENNQNVGIA SVGGPTKSTI NMTTVPKFER PTFVNGPSRV QDGPISDFPK
301: NSSFPLYSAP WQGSVTKDHT VGPSSSVIHV EHKLIDQSFE QAHKPRYLVQ QGVTNVPLKQ KNAIPISSND DLEKQSSKMG LFTSTTSASS VFPSMTTQLD
401: SSTMVNMPAP SETIPKIANV TVTPKMPSVG QKKPLEALGS SLPPSRKKQK ICGTSSDESI EKFNDVTAVS GINLREEEKQ LLDSGPKKND RVSKAYRRLV
501: HGEEERTLLQ KIPLQRKLTE IMGKSGLKHI DHDVERCLSL CVEERMRGLL FNIIRISKQR TDAEKCRNRT FITSDIRKEI NEMNQKVKEE WEKKHSGEEK
601: NKENDTEKED QRSNEVKANK KDEDKERAKA ANVAVRAAVG GDDRFSKWKL MAEARQRSSP GPGRNSKKLS GGTQFGKNQG LPKVVRSISV KDVIAVVEKE
701: PQMSRSTLLY RVYNRICSDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)