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AT1G27690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.864
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF620)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF620); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glycerol biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT3G19540.1); Has 217 Blast hits to 215 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JS49eggNOG:ENOG4111A5FEMBL:AY091035EMBL:AY117319EMBL:CP002684EnsemblPlants:AT1G27690EnsemblPlants:AT1G27690.1
entrez:839661GeneID:839661Gramene:AT1G27690.1hmmpanther:PTHR31300hmmpanther:PTHR31300:SF7HOGENOM:HOG000239944IntAct:Q8RWY0
InterPro:IPR006873KEGG:ath:AT1G27690OMA:MSSGHNTPfam:PF04788PhylomeDB:Q8RWY0Proteomes:UP000006548RefSeq:NP_564291.1
STRING:3702.AT1G27690.1TAIR:AT1G27690UniGene:At.23841UniProt:Q8RWY0
Coordinates (TAIR10) chr1:+:9636681..9638307
Molecular Weight (calculated) 48019.40 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.45
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKKHGLFSK SNSRRPRSKS PVRSVSPIII RRRKGRYVTQ PDRHMSEMLA PVIEGPDPDA EDSGSSGDYS RFERRWYNWM KCQLPVAPPS VSSSSDFKRT
101: DLRLLLGVLG APLGPVHVSA LDLLPHLSIK NTPMETSSAQ YILQQYTAAS GGQKLHSSVQ NGYVMGRIRT MASEFETGSK GSKSKNNSSK AVESGGFVLW
201: HMNPDMWYME LVLGGSKVLA GCDGKLVWRH TPWLGPHAAK GPVRPLRRAL QGLDPRTTAY MFANARCIGE KKIDGEDCFI LKLCADPATL KARSEGASET
301: IRHTLFGYFS QKTGLLVHLE DSQLTRIQNN GGEAVYWETT INSYLEDYKP VEGIMIAHSG RSVATLLRFG DMSSGHNTKT TMQEAWVIDE ISFNVPGLSI
401: DCFIPPSELR FDSHVEDLSQ GPKIRTLHGH KNG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)