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AT1G27650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : U2 snRNP auxiliary factor small subunit, putative
Curator
Summary (TAIR10)
U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.
Computational
Description (TAIR10)
ATU2AF35A; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G42820.1); Has 5134 Blast hits to 4149 proteins in 301 species: Archae - 0; Bacteria - 77; Metazoa - 3143; Fungi - 618; Plants - 577; Viruses - 15; Other Eukaryotes - 704 (source: NCBI BLink).
Protein Annotations
BioGrid:24892eggNOG:ENOG410Z5PXeggNOG:KOG2202EMBL:AC005916EMBL:AC012375EMBL:AF344324EMBL:AF409139
EMBL:AY065202EMBL:AY088540EMBL:AY090343EMBL:AY096507EMBL:AY122894EMBL:CP002684EnsemblPlants:AT1G27650
EnsemblPlants:AT1G27650.1entrez:839657ExpressionAtlas:Q9S709Gene3D:3.30.70.330GeneID:839657Genevisible:Q9S709GO:GO:0000166
GO:GO:0000398GO:GO:0003677GO:GO:0003723GO:GO:0005634GO:GO:0005681GO:GO:0016607GO:GO:0046872
GO:GO:0048573GO:GO:0089701hmmpanther:PTHR12620hmmpanther:PTHR12620:SF16HOGENOM:HOG000178619InParanoid:Q9S709InterPro:IPR000504
InterPro:IPR000571InterPro:IPR003954InterPro:IPR009145InterPro:IPR012677iPTMnet:Q9S709OMA:PHREFSHPANTHER:PTHR12620
PaxDb:Q9S709Pfam:PF00076Pfam:PF00642Pfam:Q9S709Pfscan:PS50102Pfscan:PS50103PhylomeDB:Q9S709
PRIDE:Q9S709PRINTS:PR01848PRO:PR:Q9S709PROSITE:PS50102PROSITE:PS50103ProteinModelPortal:Q9S709Proteomes:UP000006548
Reactome:R-ATH-72163Reactome:R-ATH-72187RefSeq:NP_174086.1SMART:SM00356SMART:SM00361SMR:Q9S709STRING:3702.AT1G27650.1
SUPFAM:SSF54928TAIR:AT1G27650tair10-symbols:ATU2AF35AUniGene:At.20200UniGene:At.63995UniGene:At.67851UniProt:Q9S709
Coordinates (TAIR10) chr1:+:9615152..9616042
Molecular Weight (calculated) 34574.20 Da
IEP (calculated) 9.71
GRAVY (calculated) -1.23
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)