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AT1G27640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.970
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Putative role in leaf development. Comparison of SALK_123839C to Columbia under normal growth conditions resulted in a trend toward increased leaf length in the mutant (P=0.13; median 22 for mutant,17 for Columbia) (Ann Stapleton and Delita Pardue, 2009, personal communication).
Computational
Description (TAIR10)
unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC005916EMBL:AC012375EMBL:BT029318EMBL:CP002684EnsemblPlants:AT1G27640EnsemblPlants:AT1G27640.1entrez:839656
GeneID:839656Gramene:AT1G27640.1KEGG:ath:AT1G27640PIR:E86401Proteomes:UP000006548RefSeq:NP_174085.1TAIR:AT1G27640
UniGene:At.20200UniGene:At.63995UniProt:Q9S7P4
Coordinates (TAIR10) chr1:-:9614463..9614906
Molecular Weight (calculated) 17164.20 Da
IEP (calculated) 6.69
GRAVY (calculated) -1.06
Length 147 amino acids
Sequence (TAIR10)
(BLAST)
001: MDIKSETEQY KRKAEIEKHT KEPNKHRDEA VLQNRAGRHR DRAVIDHKSE ERERESVQNV TEMSGIERSE GEWSPPVEGI TDEELPSHSP MDDLGFALFA
101: SWGRKTERQR MGSPDIRIYI FNPIKKIIIM ETRIRFGLEW KPSGFGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)