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AT1G27630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclin T 1;3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cyclin T 1;3 (CYCT1;3); CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G45190.1); Has 1569 Blast hits to 1569 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 847; Fungi - 342; Plants - 269; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Protein Annotations
BioGrid:24890eggNOG:COG5333eggNOG:KOG0834EMBL:AC005916EMBL:AC012375EMBL:AF344323EMBL:AK117692
EMBL:AK229729EMBL:AY062805EMBL:AY081601EMBL:AY087303EMBL:CP002684EnsemblPlants:AT1G27630EnsemblPlants:AT1G27630.1
entrez:839655Gene3D:1.10.472.10GeneID:839655Genevisible:Q8LBC0GO:GO:0000307GO:GO:0005634GO:GO:0007049
GO:GO:0016538GO:GO:0045737GO:GO:0045944GO:GO:0051301GO:GO:1901409hmmpanther:PTHR10026hmmpanther:PTHR10026:SF77
HOGENOM:HOG000220828InParanoid:Q8LBC0IntAct:Q8LBC0InterPro:IPR006671InterPro:IPR013763KEGG:ath:AT1G27630KO:K15188
OMA:CYTVLCYPaxDb:Q8LBC0Pfam:PF00134Pfam:Q8LBC0PhylomeDB:Q8LBC0PIR:D86401PRIDE:Q8LBC0
PRO:PR:Q8LBC0ProteinModelPortal:Q8LBC0Proteomes:UP000006548Reactome:R-ATH-112382Reactome:R-ATH-674695RefSeq:NP_174084.1SMART:SM00385
SMR:Q8LBC0STRING:3702.AT1G27630.1SUPFAM:SSF47954TAIR:AT1G27630tair10-symbols:CYCT1;3UniGene:At.11523UniProt:Q8LBC0
Coordinates (TAIR10) chr1:+:9611647..9613967
Molecular Weight (calculated) 36764.10 Da
IEP (calculated) 8.17
GRAVY (calculated) -0.31
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)