AT1G27595.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:9596475..9602917 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104983.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.58 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||
| Length | 961 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPQGEDDTIN GEVAPKRVRH NTNMHLTQQV QTNESLQGPV SINGISSGNH LSDSELTPVE QMVSMIGALL AEGDRGAASL EILISKLHPD MLADIVITSM 101: KHLPSTPPTL ASSVATPADI VVSSSTNTVH SPTPPAQLPF DPILPAGSSF SEVPSLSSSV ADPRRDPRRD PRRMDPRRLN SSVGPTSLPV GEGKESVPVQ 201: KDISTLLSKP VSVSAVTPGA TGSVHSTAVE LSQNKMMGSS GIRIIDPPEC REDLLTVPNE CSYPSKEISS LDVPLSPCRD DEGIRETKYS VPDLDMLSVP 301: DFDQHSPSAS VPDFDQDPPA ASDITAPEES YRELDPVPSY VELTTEQSKT VGKLAIERII ESNRHVFGFD CNKIRMALIA RLIARIDAGS DVATILRELI 401: SVDHREFKGH DLVLHVLYHL HSMAILDTDE SSFYATVYEN FLISVARSFL DALPASDKSF SRLFGEAPHL PDSAINLLDE LCSTRHDPVG KEVCDSERVT 501: QGLGAVWSLI LVRPNERKAC LAIALKCSVH SEEEVRAKAI RLVTNKLYHL TYIAEHVEQF ATDMLLTAVN SETNLSQTAS TAEGIKMEAK SQITLTTESL 601: GSGNSDIPSQ QDLQTSREVS VISISEAQRL ISLFFALCKK KPSLLRLVFE VYGRAPKMVN QAFHRHIPIL IRELGSSYTE LLQIISDPPK GSENLLTYVL 701: QILTQELAPS LDLIATVKHL YETKLKDVSI LIPLLSSLTK DEVLPIFPPL LNLPPEKFQL ALAHILQGSA HTGPALTPAE VLIAIHDIVP EKDGPPLKKI 801: TDACSACFEQ RTVFTQQVLA KALGQMVDRT PLPLLFMRTV IQAIDAFPTL VDFVMEILSK LVRKQIWRLP KLWPGFLKCV SQTKPHSFPV LLELPVPQLE 901: SIMKKFPDLR PSLTAYANQP TIRSSLPNSA LSVLGLDNGQ DSRSQMHPSD ATSSIHGAAL T |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)