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AT1G27461.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQNReggNOG:KOG2048EMBL:CP002684EMBL:DQ492206
EnsemblPlants:AT1G27461EnsemblPlants:AT1G27461.1entrez:6240762GeneID:6240762
Gramene:AT1G27461.1hmmpanther:PTHR33595hmmpanther:PTHR33595:SF1KEGG:ath:AT1G27461
OMA:CESREYLPhylomeDB:Q1G322Proteomes:UP000006548RefSeq:NP_001117365.1
STRING:3702.AT1G27461.1TAIR:AT1G27461UniGene:At.47648UniProt:Q1G322
Coordinates (TAIR10) chr1:-:9537948..9539012
Molecular Weight (calculated) 39522.30 Da
IEP (calculated) 9.58
GRAVY (calculated) -0.56
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MIKILNPHSH HSQTTTLKTA EILSKYRPIA PKPGTPRVND DDPSSSMSHK ISQSPYLRNL WPQLQARPTR TRKRGRGGMG PSSLAMKRPK SSCGSSSTST
101: ISTQRVLGPI KTLSFQAFTH HRLPNLPQVG YGFENGVSST LVTLPLLQCS PPSSKCMEPE IKGKGVIDLN KTAEVIQERD FLTQLQGPIT TTTTATTSRV
201: ISPQPIRPVC SKINVAYINP LTNPSPTSQT SKKSPREVEE DVESDDLPSV ITDSNSRVRL VNSAYKEMMG QPECSWLDSM VRGKRICGEV MINFCESKIP
301: VMTENNGFSC WVRIDWGRDG KEEYMHAFCD VTKLACDSKD YVFTWRFHTT TDRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)