AT1G27460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : no pollen germination related 1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
no pollen germination related 1 (NPGR1); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G43040.1); Has 2043 Blast hits to 1708 proteins in 322 species: Archae - 185; Bacteria - 626; Metazoa - 573; Fungi - 23; Plants - 162; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9534977..9537424 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76875.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.82 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 694 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLCACSGEQF RFEDQPGSPE SLATRDFSAS GLSSRNGGGD WDSKLEDIQV DEAESTLKEA LSLNYEEARA LLGRLEYQRG NFDAALQVFK GIDIKVLTPR 101: IIKAIVEKTL PCKPRSKAVI VPPTTMSMHS VSLLLEAILL KARSLEELGS YKEAAEECKI ILDVVENALP SGMPDGISGF AKLQDIFQKA LELLPLLWKK 201: AGNHHETIAS YRRALSRPWN LDPQRLAVTQ KSLALVLLYG SVEACPKDNI EEAIVLLMLL VKKMVVGDIQ WDPELMDHLT YALSMTGQFE VLANYLEQTL 301: PGVYTRGERW YLLSLCYSAA GIDKAAINLL KMALGPSESR QIPHIPLLLF GAKLCSKDPK HSRDGINFAH RLLDLGNSQS EHLLSQAHKF LGVCYGNAAR 401: SSKLDSERVF LQKKSLFSLN EAAKRGKADP ELDVIFNLSV ENAVQRNVQA ALDGAVEYSS MVGGVSTKGW KHLAIVLSAE KRLKDAESIL DFTMEEAGDI 501: EKIELLRLKA VLQMAQEQPK KAMKTCSSLL GLIRAQEKSE QSESLLQKFE TEAWQDLASV YGKLGSWSDA ETCLEKARSM CYYSPRGWNE TGLCLEAKSL 601: HEEALISFFL SLSIEPDHVP SIVSIAEVMM KSGDESLPTA KSFLMNALRL DPRNHDAWMK LGHVAKKQGL SQQAAEFYQA AYELELSAPV QSFI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)