AT1G27410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.643 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA repair metallo-beta-lactamase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA repair metallo-beta-lactamase family protein; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 810 Blast hits to 798 proteins in 218 species: Archae - 6; Bacteria - 54; Metazoa - 272; Fungi - 214; Plants - 166; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9517226..9518743 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47765.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.11 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||
| Length | 422 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESGLISVDR WRNGSQAYFL THIHSDHTRG LSGGWSQGPL YCSRTTASLF PSRFPGFDLS LLRVVPLFSW TSLSLRSPSS GSTVRLHLMA IDAHHCPGSI 101: MFLFRGDFGC FLYTGDFRWD SDASDEARTT LVAAIDEFPV DILYLDNTYC NPIYSFPSRL VAVQLVADII ASHPSHDIII AVDSLGKEDL LVHVSRILNI 201: KIWVWPERLR TMHLLGFQDI FTTDTSLTRV RAVPRYSFSI QTLEGLNTMC PTIGIMPSGL PWVKRPFKGD DKLSGSFLTA SMKNETVSAK KELEAAAVHK 301: FHDYMYSVHY SDHSCYEEIG EFIKLVKPKS MKGIVVSSSS YVDPLYYFGR ICGANQPPQV LLMRPDIAEE FRAVRIKSYS ASDKTRMLAK EKRWKRDSHS 401: SLKRNKKRAR IQVKCAKILE VD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)