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AT1G27310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nuclear transport factor 2A
Curator
Summary (TAIR10)
Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport.
Computational
Description (TAIR10)
nuclear transport factor 2A (NTF2A); CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2B (TAIR:AT1G27970.1); Has 977 Blast hits to 977 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 416; Fungi - 243; Plants - 223; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111QUXeggNOG:KOG2104EMBL:AC004557EMBL:AY042889EMBL:AY072473EMBL:CP002684EnsemblPlants:AT1G27310
EnsemblPlants:AT1G27310.1entrez:839620Gene3D:3.10.450.50GeneID:839620GO:GO:0005634GO:GO:0005635GO:GO:0005737
GO:GO:0006606Gramene:AT1G27310.1hmmpanther:PTHR12612HOGENOM:HOG000197024InterPro:IPR002075InterPro:IPR018222InterPro:IPR032710
KEGG:ath:AT1G27310OMA:CAHTVVTPfam:PF02136Pfscan:PS50177PhylomeDB:Q9FZK4PIR:H86398PROSITE:PS50177
Proteomes:UP000006548RefSeq:NP_174051.1SMR:Q9FZK4STRING:3702.AT1G27310.1SUPFAM:SSF54427TAIR:AT1G27310tair10-symbols:NTF2A
UniGene:At.48239UniGene:At.66864UniProt:Q9FZK4
Coordinates (TAIR10) chr1:-:9484615..9485790
Molecular Weight (calculated) 13528.10 Da
IEP (calculated) 6.50
GRAVY (calculated) -0.14
Length 122 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPDAVAKAF VEHYYSTFDA NRPGLVSLYQ EGSMLTFEGQ KIQGSQNIVA KLTGLPFQQC KHNITTVDCQ PSGPAGGMLV FVSGNLQLAG EQHALKFSQM
101: FHLISNQGNY YVFNDIFRLN YA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)