AT1G27220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.850 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : paired amphipathic helix repeat-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
paired amphipathic helix repeat-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G27250.1); Has 833 Blast hits to 732 proteins in 188 species: Archae - 0; Bacteria - 52; Metazoa - 196; Fungi - 169; Plants - 372; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9463806..9465444 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 21360.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.05 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||
| Length | 184 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGEGSKPKA TVDDAYAYIR TVKSTFHNDP DKYDDFMAIM KNFKARKIDR NTCIEEVKEL LKGHRDLISG FNAFLPKCLE IADWYNIEVL EAELQALLMA 101: MQHTWSKGYR KIIFEGDNRT VESLLNGNTR NFELHNLIIE IQHWRKKFSN AIIKWSFRST NKAADRLAKG ELENNVTFVS HSTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)