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AT1G27200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Domain of unknown function (DUF23)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G27330.1); Has 321 Blast hits to 319 proteins in 87 species: Archae - 0; Bacteria - 165; Metazoa - 2; Fungi - 4; Plants - 113; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
EC:2.4.1.-eggNOG:ENOG410IVS1eggNOG:ENOG4111YH8EMBL:AC000348
EMBL:AF370145EMBL:AY150464EMBL:CP002684EnsemblPlants:AT1G27200
EnsemblPlants:AT1G27200.1entrez:839609ExpressionAtlas:Q94K98GeneID:839609
Genevisible:Q94K98GO:GO:0005794GO:GO:0016021GO:GO:0016757
Gramene:AT1G27200.1hmmpanther:PTHR21461hmmpanther:PTHR21461:SF16HOGENOM:HOG000084567
InParanoid:Q94K98IntAct:Q94K98InterPro:IPR008166KEGG:ath:AT1G27200
OMA:HSWLGVEPaxDb:Q94K98Pfam:PF01697Pfam:Q94K98
PhylomeDB:Q94K98PIR:C86398PRIDE:Q94K98PRO:PR:Q94K98
ProteinModelPortal:Q94K98Proteomes:UP000006548RefSeq:NP_564272.1STRING:3702.AT1G27200.1
TAIR:AT1G27200TMHMM:TMhelixUniGene:At.24309UniProt:I1VCA1
UniProt:Q94K98
Coordinates (TAIR10) chr1:-:9449812..9451539
Molecular Weight (calculated) 66364.00 Da
IEP (calculated) 7.97
GRAVY (calculated) -0.45
Length 575 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEYENGKKR KVRNKQQVKV QFLSQRYLIL CFCCFFVLLF FLSSDRISTL SVRSDSLRPS LRVPTLSVLS SSMDSFHRGR FPPLSVEDRV QFPDHLLLIL
101: SHGIGKGEKN LVCVYRGVKE ETLVLPSISS DEFDEFRSIV RCPNAPLNYS SSVDLQFRGD LVKKKMKKQS RRVHNWEKVG YEAVIDGDTV VVFVKGLTRR
201: PHKESDPSYY KCQFEIENSE EKEVTQAIAA AQEVVRCGLP ESLKLNPEMM FRVSVIHIDP RGRTTPALPS VARIYGSDSI EKKEKKSGVK HELCVCTMLW
301: NQAPFLREWI MYHSWLGVER WFIYDNNSDD GIQEEIELLS SENYNVSRHV WPWIKTQEAG FSHCAVRAKE ECNWVGFFDV DEFYYFPTHR SQGLPSKNAL
401: KSLVSNYTSW DLVGEIRTDC HSYGPSGLTS VPSQGVTVGY TCRQANPERH KSIIRPELLT SSLLNEVHHF QLKEGVGHMS LVESVAVVNH YKYQVWDTFK
501: AKFYRRVATY VVDWQENQNQ GSKDRAPGLG TEAIEPPDWK RRFCEVWDTG LKDLVMSNFA DQVTGYLPWQ RQQQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)