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AT1G27190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : nucleus 18433157
AmiGO : plasma membrane 16618929
AmiGO : plasma membrane 17644812
SwissProt : plasma membrane 16381842
TAIR : nucleus 18433157
TAIR : plasma membrane 16618929
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G69990.1); Has 109141 Blast hits to 65135 proteins in 2350 species: Archae - 52; Bacteria - 7607; Metazoa - 18517; Fungi - 2536; Plants - 71890; Viruses - 144; Other Eukaryotes - 8395 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0515eggNOG:ENOG410IIWAEMBL:FJ708638EnsemblPlants:AT1G27190EnsemblPlants:AT1G27190.1entrez:839608ExpressionAtlas:C0LGE9
Gene3D:3.80.10.10GeneID:839608GO:GO:0004672GO:GO:0005524GO:GO:0016021Gramene:AT1G27190.1hmmpanther:PTHR27000
hmmpanther:PTHR27000:SF47InterPro:IPR000719InterPro:IPR001245InterPro:IPR001611InterPro:IPR011009InterPro:IPR013210InterPro:IPR032675
KEGG:ath:AT1G27190OMA:TQIVECKPaxDb:C0LGE9PaxDb:O04567Pfam:O04567Pfam:PF00560Pfam:PF07714
Pfam:PF08263Pfam:PF13516Pfscan:PS50011PhylomeDB:C0LGE9PRIDE:C0LGE9PROSITE:PS50011ProteinModelPortal:C0LGE9
RefSeq:NP_174039.1SMR:C0LGE9STRING:3702.AT1G27190.1SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT1G27190TMHMM:TMhelix
UniGene:At.16279UniProt:C0LGE9UniProt:O04567
Coordinates (TAIR10) chr1:-:9446923..9448728
Molecular Weight (calculated) 65427.80 Da
IEP (calculated) 7.55
GRAVY (calculated) -0.01
Length 601 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKIFITLLW LLFISSFLCS SSSAEDDVLC LQGLKNSLID PSSRLSSWSF PNSSASSICK LTGVSCWNEK ENRIISLQLQ SMQLAGEIPE SLKLCRSLQS
101: LDLSGNDLSG SIPSQICSWL PYLVTLDLSG NKLGGSIPTQ IVECKFLNAL ILSDNKLSGS IPSQLSRLDR LRRLSLAGND LSGTIPSELA RFGGDDFSGN
201: NGLCGKPLSR CGALNGRNLS IIIVAGVLGA VGSLCVGLVI FWWFFIREGS RKKKGYGAGK SKDDSDWIGL LRSHKLVQVT LFQKPIVKIK LGDLMAATNN
301: FSSGNIDVSS RTGVSYKADL PDGSALAVKR LSACGFGEKQ FRSEMNKLGE LRHPNLVPLL GYCVVEDERL LVYKHMVNGT LFSQLHNGGL CDAVLDWPTR
401: RAIGVGAAKG LAWLHHGCQP PYLHQFISSN VILLDDDFDA RITDYGLAKL VGSRDSNDSS FNNGDLGELG YVAPEYSSTM VASLKGDVYG FGIVLLELVT
501: GQKPLSVING VEGFKGSLVD WVSQYLGTGR SKDAIDRSIC DKGHDEEILQ FLKIACSCVV SRPKERPTMI QVYESLKNMA DKHGVSEHYD EFPLVFNKQE
601: A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)