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AT1G27080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : nitrate transporter 1.6
Curator
Summary (TAIR10)
Encodes a protein with low-affinity nitrate transporter activity that is expressed in the vascular tissue of the funiculus and the silique. This plasma membrane-localized enzyme is predicted to have 12 transmembrane domains. Plants lacking NRT1.6 have reduced levels of nitrate in their seeds and have increased levels of early embryonic developmental defects and seed abortion.
Computational
Description (TAIR10)
nitrate transporter 1.6 (NRT1.6); CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.7 (TAIR:AT1G69870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3104eggNOG:KOG1237EMBL:AC000348EMBL:CP002684
EMBL:EU266070EnsemblPlants:AT1G27080EnsemblPlants:AT1G27080.1entrez:839597
GeneID:839597Genevisible:Q9LFX9GO:GO:0005886GO:GO:0006857
GO:GO:0009793GO:GO:0010098GO:GO:0015293GO:GO:0016021
GO:GO:0042128GO:GO:0043562GO:GO:0048316GO:GO:0080054
GO:GO:0080055Gramene:AT1G27080.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF20
HOGENOM:HOG000237399InParanoid:Q9LFX9InterPro:IPR000109InterPro:IPR018456
InterPro:IPR020846KEGG:ath:AT1G27080OMA:RAITFILPANTHER:PTHR11654
PaxDb:Q9LFX9Pfam:PF00854Pfam:Q9LFX9PhylomeDB:Q9LFX9
PIR:E86397PRIDE:Q9LFX9PRO:PR:Q9LFX9PROSITE:PS01022
ProteinModelPortal:Q9LFX9Proteomes:UP000006548Reactome:R-ATH-427975RefSeq:NP_174028.2
scanprosite:PS01022SMR:Q9LFX9STRING:3702.AT1G27080.1SUPFAM:SSF103473
TAIR:AT1G27080tair10-symbols:NRT1.6TCDB:2.A.17.3.14TMHMM:TMhelix
UniGene:At.51780UniProt:Q9LFX9
Coordinates (TAIR10) chr1:+:9400664..9403789
Molecular Weight (calculated) 64933.80 Da
IEP (calculated) 7.53
GRAVY (calculated) 0.32
Length 576 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVVENRKIL PEKKLGGWRA ITFILGNETL EKLGSIGVSA NFMLYLRNVF HMEPVEAFNV YYLWMGLTNF APLLGALISD AYIGRFKTIA YASLFSILGL
101: MTVTLTACLP QLHPPPCNNP HPDECDDPNK LQLGILFLGL GFLSIGSGGI RPCSIPFGVD QFDQRTEQGL KGVASFFNWY YLTLTMVLIF SHTVVVYLQT
201: VSWVIGFSIP TSLMACAVVL FFVGMRFYVY VKPEGSVFSG IARVIVAARK KRDLKISLVD DGTEEYYEPP VKPGVLSKLP LTDQFKFLDK AAVILDGDLT
301: SEGVPANKWR LCSIQEVEEV KCLIRVVPVW SAGIISIVAM TTQATFMVFQ ATKMDRHMGP HFEIPAASIT VISYITIGIW VPIYEHLLVP FLWRMRKFRV
401: TLLQRMGIGI VFAILSMFTA GFVEGVRRTR ATEMTQMSVF WLALPLILMG LCESFNFIGL IEFFNSQFPE HMRSIANSLF PLSFAAANYL SSLLVTTVHK
501: VSGTKDHPDW LNKDLDRGKL DYFYYLIAVL GVVNLVYFWY CAHRYQYKAG SQIEDFNEEK SLLDIEPNQR HDQSPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)