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AT1G27040.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.768
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1:2 (TAIR:AT1G69850.1); Has 5753 Blast hits to 5637 proteins in 1030 species: Archae - 0; Bacteria - 2265; Metazoa - 487; Fungi - 395; Plants - 2179; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).
Protein Annotations
BioGrid:24828eggNOG:COG3104eggNOG:KOG1237EMBL:AC000348
EMBL:AY072134EMBL:AY096445EMBL:CP002684EnsemblPlants:AT1G27040
EnsemblPlants:AT1G27040.1entrez:839593GeneID:839593Genevisible:Q8VYE4
GO:GO:0005215GO:GO:0016021hmmpanther:PTHR11654hmmpanther:PTHR11654:SF98
HOGENOM:HOG000237400InParanoid:Q8VYE4IntAct:Q8VYE4InterPro:IPR000109
InterPro:IPR020846KEGG:ath:AT1G27040OMA:LMPPPCKPANTHER:PTHR11654
PaxDb:Q8VYE4Pfam:PF00854Pfam:Q8VYE4PhylomeDB:Q8VYE4
PIR:C86397PRO:PR:Q8VYE4ProteinModelPortal:Q8VYE4Proteomes:UP000006548
RefSeq:NP_174024.2RefSeq:NP_973919.1SMR:Q8VYE4STRING:3702.AT1G27040.1
SUPFAM:SSF103473TAIR:AT1G27040TMHMM:TMhelixUniGene:At.16283
UniProt:Q8VYE4
Coordinates (TAIR10) chr1:-:9386893..9390018
Molecular Weight (calculated) 62656.10 Da
IEP (calculated) 9.17
GRAVY (calculated) 0.45
Length 567 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVEMHGDVS KWEGYADWRN KAALRGRHGG MLAASFVLAV EILENLAFLA NASNLVLYLK NFMHMSLARS SSEVTTFMAT AFLLALLGGF LADAFFSTFV
101: IFLISASIEF LGLILLTIQA RRPSLMPPPC KSSAALRCEV VGGSKAAFLF VGLYLVSLGI GGIKGSLPSH GAEQFDEGTP KGRKQRSTFF NYYVFCLSCG
201: ALVAVTFVVW IEDNKGWEWG FGVSTISIFL SILVFLLGSR FYKNKIPRGS PLTTIFKVLL AASIVSCSSK TSSNHFTSRE VQSEHEEKTP SQSLTNSLTC
301: LNKAIEGKTH HIWLECTVQQ VEDVKIVLKM LPIFGCTIML NCCLAQLSTY SVHQAATMNR KIVNFNVPSA SLPVFPVVFM LILAPTYDHL IIPFARKVTK
401: SEIGITHLQR IGVGLVLSIV AMAVAALVEL KRKQVAREAG LLDSEETLPI TFLWIALQYL FLGSADLFTL AGLLEFFFTE APSSMRSLAT SLSWASLALG
501: YYLSSVMVPI VNRVTKSAGQ SPWLGEKLNR NRLDLFYWLM CVLSVVNFLH YLFWAKRYKY ISTGSIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)