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AT1G26960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeobox protein 23
Curator
Summary (TAIR10)
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational
Description (TAIR10)
homeobox protein 23 (AtHB23); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to gibberellin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein family (TAIR:AT1G69780.1); Has 11101 Blast hits to 11053 proteins in 666 species: Archae - 0; Bacteria - 4; Metazoa - 8567; Fungi - 242; Plants - 2058; Viruses - 5; Other Eukaryotes - 225 (source: NCBI BLink).
Protein Annotations
BioGrid:24822eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AC005508EMBL:AK228056EMBL:AY084913EMBL:BT009727
EMBL:CP002684EnsemblPlants:AT1G26960EnsemblPlants:AT1G26960.1entrez:839587Gene3D:1.10.10.60GeneID:839587Genevisible:Q8LFD3
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009739GO:GO:0043565Gramene:AT1G26960.1hmmpanther:PTHR24326
hmmpanther:PTHR24326:SF176HOGENOM:HOG000006025InParanoid:Q8LFD3InterPro:IPR000047InterPro:IPR001356InterPro:IPR003106InterPro:IPR009057
InterPro:IPR017970KEGG:ath:AT1G26960KO:K09338ncoils:CoilOMA:IDVCHEEPaxDb:Q8LFD3Pfam:PF00046
Pfam:PF02183Pfam:Q8LFD3Pfscan:PS50071PhylomeDB:Q8LFD3PIR:F86396PRIDE:Q8LFD3PRINTS:PR00031
PRO:PR:Q8LFD3PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:Q8LFD3Proteomes:UP000006548RefSeq:NP_564268.1scanprosite:PS00027
SMART:SM00340SMART:SM00389STRING:3702.AT1G26960.1SUPFAM:SSF46689TAIR:AT1G26960tair10-symbols:AtHB23tair10-symbols:HB23
UniGene:At.43561UniProt:Q8LFD3
Coordinates (TAIR10) chr1:+:9356126..9357239
Molecular Weight (calculated) 29664.60 Da
IEP (calculated) 4.80
GRAVY (calculated) -1.05
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MSCNNNGLAF FPENFSLQNH HQEEEDHPQL LQDFHGFLGK RSPMNNVQGF CNLDMNGDEE YSDDGSKMGE KKRRLNMEQL KALEKDFELG NKLESDRKLE
101: LARALGLQPR QIAIWFQNRR ARSKTKQLEK DYDMLKRQFE SLRDENEVLQ TQNQKLQAQV MALKSREPIE SINLNKETEG SCSDRSENIS GDIRPPEIDS
201: QFALGHPPTT TTMQFFQNSS SEQRMVKEEN SISNMFCGID DQSGFWPWLD QQQYN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)