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AT1G26780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : myb domain protein 117
Curator
Summary (TAIR10)
Encodes LOF1 (LATERAL ORGAN FUSION1), a MYB-domain transcription factor expressed in organ boundaries. Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF2 (At1g69560).
Computational
Description (TAIR10)
myb domain protein 117 (MYB117); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 105 (TAIR:AT1G69560.1); Has 8859 Blast hits to 7959 proteins in 558 species: Archae - 0; Bacteria - 0; Metazoa - 904; Fungi - 604; Plants - 5383; Viruses - 5; Other Eukaryotes - 1963 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AF334816EMBL:AY519559
EMBL:CP002684EMBL:DQ446291EnsemblPlants:AT1G26780EnsemblPlants:AT1G26780.1
entrez:839219ExpressionAtlas:Q9C5P9Gene3D:1.10.10.60GeneID:839219
GO:GO:0003677Gramene:AT1G26780.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF512
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930Pfam:PF00249
Pfscan:PS51294PhylomeDB:Q9C5P9PROSITE:PS51294Proteomes:UP000006548
RefSeq:NP_564261.1SMART:SM00717SMR:Q9C5P9STRING:3702.AT1G26780.2
SUPFAM:SSF46689TAIR:AT1G26780tair10-symbols:AtMYB117tair10-symbols:LOF1
tair10-symbols:MYB117UniGene:At.15646UniProt:Q9C5P9
Coordinates (TAIR10) chr1:+:9271033..9272128
Molecular Weight (calculated) 32758.20 Da
IEP (calculated) 9.61
GRAVY (calculated) -0.93
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MFITEKQVWM DEIVARRASS SWDFPFNDIN IHQHHHRHCN TSHEFEILKS PLGDVAVHEE ESNNNNPNFS NSESGKKETT DSGQSWSSSS SKPSVLGRGH
101: WRPAEDVKLK ELVSIYGPQN WNLIAEKLQG RSGKSCRLRW FNQLDPRINR RAFTEEEEER LMQAHRLYGN KWAMIARLFP GRTDNSVKNH WHVVMARKYR
201: EHSSAYRRRK LMSNNPLKPH LTNNHHPNPN PNYHSFISTN HYFAQPFPEF NLTHHLVNNA PITSDHNQLV LPFHCFQGSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)