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AT1G26690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23918961 (2013): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : emp24/gp25L/p24 family/GOLD family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G69460.1); Has 1567 Blast hits to 1565 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 690; Fungi - 472; Plants - 246; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTBQeggNOG:KOG1691EMBL:AC006535EMBL:AK118529
EMBL:AY084765EMBL:BT003733EMBL:CP002684EnsemblPlants:AT1G26690
EnsemblPlants:AT1G26690.1entrez:839210GeneID:839210Genevisible:Q9LQY3
GO:GO:0005789GO:GO:0015031GO:GO:0016021GO:GO:0016192
GO:GO:0032580GO:GO:0033116Gramene:AT1G26690.1hmmpanther:PTHR22811
hmmpanther:PTHR22811:SF47HOGENOM:HOG000160227InParanoid:Q9LQY3InterPro:IPR009038
InterPro:IPR015720KEGG:ath:AT1G26690OMA:QSGRTKCPANTHER:PTHR22811
PaxDb:Q9LQY3Pfam:PF01105Pfam:Q9LQY3Pfscan:PS50866
PhylomeDB:Q9LQY3PRIDE:Q9LQY3PRO:PR:Q9LQY3PROSITE:PS50866
Proteomes:UP000006548Reactome:R-ATH-6807878RefSeq:NP_564256.1SMART:SM01190
STRING:3702.AT1G26690.1TAIR:AT1G26690TMHMM:TMhelixUniGene:At.41207
UniProt:Q9LQY3
Coordinates (TAIR10) chr1:-:9224299..9225682
Molecular Weight (calculated) 24398.10 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.20
Length 214 amino acids
Sequence (TAIR10)
(BLAST)
001: MFLRSLNLCT ILLFLAISSQ VSQSLHFELQ SGRTKCISED IKSNSMTVGK YTVVNPNEAH PSPQSHKISI RVTSSYGNTY HHAEDVESGQ FAFTAVESGD
101: YMACYTAVDH KPEVTLSIDF DWRTGVQSKS WSSVAKKSQV EVMEFDVKRL IETVNSIHEE MFYLREREEE MQNLNRATNS KMAWLSFLSL FVCLGVAGMQ
201: FVHLKTFFEK KKVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)