suba logo
AT1G26630.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22215637 (2012): plasma membrane
  • PMID:20061580 (2010): plastid
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein
Curator
Summary (TAIR10)
Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection.
Computational
Description (TAIR10)
FUMONISIN B1-RESISTANT12 (FBR12); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3 (TAIR:AT1G69410.1); Has 1331 Blast hits to 1330 proteins in 409 species: Archae - 256; Bacteria - 0; Metazoa - 365; Fungi - 242; Plants - 261; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).
Protein Annotations
BioGrid:24439eggNOG:COG0231eggNOG:KOG3271EMBL:AC006535EMBL:AF492850EMBL:AY039588EMBL:AY055789
EMBL:AY084827EMBL:CP002684EnsemblPlants:AT1G26630EnsemblPlants:AT1G26630.1EnsemblPlants:AT1G26630.2entrez:839203EvolutionaryTrace:Q93VP3
ExpressionAtlas:Q93VP3Gene3D:2.30.30.30Gene3D:2.40.50.140GeneID:839203Genevisible:Q93VP3GO:GO:0003743GO:GO:0003746
GO:GO:0005634GO:GO:0005737GO:GO:0006413GO:GO:0006452GO:GO:0009611GO:GO:0009617GO:GO:0012501
GO:GO:0034050GO:GO:0042742GO:GO:0043022GO:GO:0045901GO:GO:0045905GO:GO:0046686hmmpanther:PTHR11673
hmmpanther:PTHR11673:SF8HOGENOM:HOG000106270InParanoid:Q93VP3IntAct:Q93VP3InterPro:IPR001884InterPro:IPR008991InterPro:IPR012340
InterPro:IPR014722InterPro:IPR019769InterPro:IPR020189iPTMnet:Q93VP3KEGG:ath:AT1G26630KO:K03263OMA:NEENHEH
PANTHER:PTHR11673PaxDb:Q93VP3PDB:3HKSPDBsum:3HKSPfam:PF01287Pfam:Q93VP3PhylomeDB:Q93VP3
PIRSF:PIRSF003025PRIDE:Q93VP3PRO:PR:Q93VP3PROSITE:PS00302ProteinModelPortal:Q93VP3Proteomes:UP000006548Reactome:R-ATH-204626
RefSeq:NP_001077597.1RefSeq:NP_173985.1scanprosite:PS00302SMART:SM01376SMR:Q93VP3STRING:3702.AT1G26630.1SUPFAM:SSF50104
SUPFAM:SSF50249SwissPalm:Q93VP3TAIR:AT1G26630tair10-symbols:ATELF5A-2tair10-symbols:ELF5A-2tair10-symbols:FBR12TIGRfam:TIGR00037
TIGRFAMs:TIGR00037UniGene:At.21018UniProt:Q93VP3
Coordinates (TAIR10) chr1:+:9205968..9207098
Molecular Weight (calculated) 17141.20 Da
IEP (calculated) 5.81
GRAVY (calculated) -0.40
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDDEHHFEA SESGASKTYP QSAGNIRKGG HIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTAKKL EDIVPSSHNC DVPHVNRVDY QLIDITEDGF
101: VSLLTDSGGT KDDLKLPTDD GLTAQMRLGF DEGKDIVVSV MSSMGEEQIC AVKEVGGGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)