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AT1G26450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Carbohydrate-binding X8 domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Carbohydrate-binding X8 domain superfamily protein; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: plasmodesmata callose-binding protein 3 (TAIR:AT1G18650.1); Has 11073 Blast hits to 3511 proteins in 410 species: Archae - 18; Bacteria - 672; Metazoa - 2248; Fungi - 1003; Plants - 1218; Viruses - 195; Other Eukaryotes - 5719 (source: NCBI BLink).
Protein Annotations
CAZy:CBM43eggNOG:ENOG410JVKQeggNOG:ENOG41105TBEMBL:AC013427EMBL:AK228207EMBL:BT005854EMBL:CP002684
EnsemblPlants:AT1G26450EnsemblPlants:AT1G26450.1entrez:839186GeneID:839186Genevisible:Q9FZD0GO:GO:0005886GO:GO:0031225
Gramene:AT1G26450.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF67HOGENOM:HOG000238097InParanoid:Q9FZD0InterPro:IPR012946KEGG:ath:AT1G26450
OMA:YQKKASTPaxDb:Q9FZD0Pfam:PF07983Pfam:Q9FZD0PIR:C86391PRIDE:Q9FZD0PRO:PR:Q9FZD0
ProteinModelPortal:Q9FZD0Proteomes:UP000006548RefSeq:NP_173968.1SMART:SM00768SMR:Q9FZD0STRING:3702.AT1G26450.1TAIR:AT1G26450
TCDB:1.I.2.1.1UniGene:At.22714UniProt:Q9FZD0
Coordinates (TAIR10) chr1:-:9149003..9150063
Molecular Weight (calculated) 20040.20 Da
IEP (calculated) 4.45
GRAVY (calculated) -0.08
Length 197 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVLLPLFLL SFMFTYSNAA VCVCKDANEL DLQKVIDFAC GGGADCAQIQ TTGACYQPNT LKNHCDVAVN SYYQKKASTG ATCDFNGAAV ISTSPPSTTS
101: SCLSSSSSNG TPTAGYPSTG NSTTASPGTT NPSTGNSTNS TLPTNDKPTS STITFPDSTT MGPSSSTSGD PNGGEELSVR TTTIILLTTI AAVALRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)