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AT1G26370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 9899 Blast hits to 9180 proteins in 1561 species: Archae - 2; Bacteria - 3369; Metazoa - 2309; Fungi - 1230; Plants - 848; Viruses - 465; Other Eukaryotes - 1676 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-584-MONOMEREC:3.6.4.13eggNOG:COG1643EMBL:AC013427
EMBL:BT008611EMBL:CP002684EnsemblPlants:AT1G26370EnsemblPlants:AT1G26370.1
entrez:839179Gene3D:3.40.50.300GeneID:839179GO:GO:0004004
GO:GO:0005524GO:GO:0005634GO:GO:0005681GO:GO:0005730
GO:GO:0006396GO:GO:0006397GO:GO:0008380GO:GO:0043484
GO:GO:0044822Gramene:AT1G26370.1hmmpanther:PTHR18934hmmpanther:PTHR18934:SF143
HOGENOM:HOG000175261InParanoid:F4IE66InterPro:IPR001650InterPro:IPR003593
InterPro:IPR007502InterPro:IPR011709InterPro:IPR014001InterPro:IPR027417
KEGG:ath:AT1G26370KO:K12818OMA:CEKINTIPaxDb:Q9FZC3
Pfam:PF00271Pfam:PF04408Pfam:PF07717Pfscan:PS51192
Pfscan:PS51194PIR:D86390PRIDE:F4IE66PROSITE:PS51192
PROSITE:PS51194ProteinModelPortal:F4IE66Proteomes:UP000006548RefSeq:NP_173961.3
SMART:SM00382SMART:SM00487SMART:SM00490SMART:SM00847
SMR:F4IE66STRING:3702.AT1G26370.1SUPFAM:SSF52540TAIR:AT1G26370
UniGene:At.15978UniProt:F4IE66
Coordinates (TAIR10) chr1:-:9122030..9125368
Molecular Weight (calculated) 80520.00 Da
IEP (calculated) 8.89
GRAVY (calculated) -0.31
Length 717 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)