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AT1G26340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytochrome B5 isoform A
Curator
Summary (TAIR10)
encodes a member of the cytochromes b5 family of proteins that localizes to the outer envelope of the chloroplast. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro.
Computational
Description (TAIR10)
cytochrome B5 isoform A (CB5-A); CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform B (TAIR:AT2G32720.1); Has 4207 Blast hits to 4178 proteins in 465 species: Archae - 2; Bacteria - 26; Metazoa - 1058; Fungi - 1672; Plants - 799; Viruses - 3; Other Eukaryotes - 647 (source: NCBI BLink).
Protein Annotations
BioGrid:24412eggNOG:COG5274eggNOG:KOG0537EMBL:AC013427EMBL:AC079829EMBL:AF332415EMBL:AK117459
EMBL:AY084761EMBL:CP002684EnsemblPlants:AT1G26340EnsemblPlants:AT1G26340.1entrez:839176Gene3D:3.10.120.10GeneID:839176
Genevisible:Q9FDW8GO:GO:0009707GO:GO:0010319GO:GO:0016021GO:GO:0020037GO:GO:0031966GO:GO:0046872
Gramene:AT1G26340.1hmmpanther:PTHR19359hmmpanther:PTHR19359:SF25HOGENOM:HOG000039853InParanoid:Q9FDW8IntAct:Q9FDW8InterPro:IPR001199
InterPro:IPR018506iPTMnet:Q9FDW8KEGG:ath:AT1G26340OMA:EIPEMEVPaxDb:Q9FDW8Pfam:PF00173Pfam:Q9FDW8
Pfscan:PS50255PhylomeDB:Q9FDW8PIR:A86390PRIDE:Q9FDW8PRINTS:PR00363PRO:PR:Q9FDW8ProMEX:Q9FDW8
PROSITE:PS00191PROSITE:PS50255ProteinModelPortal:Q9FDW8Proteomes:UP000006548Reactome:R-ATH-196836RefSeq:NP_173958.1scanprosite:PS00191
SMART:SM01117SMR:Q9FDW8STRING:3702.AT1G26340.1SUPFAM:SSF55856TAIR:AT1G26340tair10-symbols:ATCB5-Atair10-symbols:B5 #6
tair10-symbols:CB5-ATMHMM:TMhelixUniGene:At.15975UniProt:Q9FDW8
Coordinates (TAIR10) chr1:+:9113992..9114755
Molecular Weight (calculated) 15220.90 Da
IEP (calculated) 4.27
GRAVY (calculated) -0.36
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)