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AT1G26230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TCP-1/cpn60 chaperonin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein refolding, cellular protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin 60 beta (TAIR:AT1G55490.2); Has 34077 Blast hits to 34022 proteins in 8740 species: Archae - 776; Bacteria - 21861; Metazoa - 1711; Fungi - 1609; Plants - 849; Viruses - 2; Other Eukaryotes - 7269 (source: NCBI BLink).
Protein Annotations
BioGrid:24401eggNOG:COG0459eggNOG:KOG0356EMBL:AC079829EMBL:AK221637EMBL:CP002684EnsemblPlants:AT1G26230
EnsemblPlants:AT1G26230.1entrez:839164Gene3D:1.10.560.10Gene3D:3.50.7.10GeneID:839164Genevisible:Q9C667GO:GO:0005524
GO:GO:0006457GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0042026hmmpanther:PTHR11353hmmpanther:PTHR11353:SF81
HOGENOM:HOG000076290InParanoid:Q9C667InterPro:IPR001844InterPro:IPR002423InterPro:IPR027409InterPro:IPR027413KEGG:ath:AT1G26230
KO:K04077ncoils:CoilOMA:GYNAAKNPaxDb:Q9C667Pfam:PF00118Pfam:Q9C667PhylomeDB:Q9C667
PIR:E86388PRIDE:Q9C667PRINTS:PR00298PRO:PR:Q9C667ProteinModelPortal:Q9C667Proteomes:UP000006548RefSeq:NP_001185097.1
RefSeq:NP_173947.1SMR:Q9C667STRING:3702.AT1G26230.1SUPFAM:SSF48592SUPFAM:SSF52029SUPFAM:SSF54849TAIR:AT1G26230
TIGRfam:TIGR02348TIGRFAMs:TIGR02348UniGene:At.43575UniGene:At.68953UniProt:Q9C667
Coordinates (TAIR10) chr1:-:9072388..9075272
Molecular Weight (calculated) 66800.20 Da
IEP (calculated) 9.75
GRAVY (calculated) -0.19
Length 611 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFSQAALSA LPLSDRTFRK KPSSSSSSSP NFVLRVRAAA KEVHFNRDGS VTKKLQAGAD MVAKLLGVTL GPKGRNVVLQ NKYGPPRIVN DGETVLKEIE
101: LEDPLENVGV KLVRQAGAKT NDLAGDGSTT SIILAHGLIT EGIKVISAGT NPIQVARGIE KTTKALVLEL KSMSREIEDH ELAHVAAVSA GNDYEVGNMI
201: SNAFQQVGRT GVVTIEKGKY LVNNLEIVEG MQFNRGYLSP YFVTDRRKRE AEFHDCKLLL VDKKITNPKD MFKILDSAVK EEFPVLIVAE DIEQDALAPV
301: IRNKLKGNLK VAAIKAPAFG ERKSHCLDDL AIFTGATVIR DEMGLSLEKA GKEVLGTAKR VLVTKDSTLI VTNGFTQKAV DERVSQIKNL IENTEENFQK
401: KILNERVARL SGGIAIIQVG ALTQVELKDK QLKVEDALNA TKSAIEEGIV VGGGCALLRL ATKVDRIKET LDNTEQKIGA EIFKKALSYP IRLIAKNADT
501: NGNIVIEKVL SNKNTMYGYN AAKNQYEDLM LAGIIDPTKV VRCCLEHASS VAQTFLTSDC VVVEIKEIKP RPIINPPLPT SSPATSSMFP DRKLPRFPQI
601: MPRTRSHFPR K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)