suba logo
AT1G26210.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SOB five-like 1
Curator
Summary (TAIR10)
AtSOFL1 acts redundantly with AtSOFL2 as positive regulator of cytokinin levels.
Computational
Description (TAIR10)
SOB five-like 1 (SOFL1); BEST Arabidopsis thaliana protein match is: SOB five-like 2 (TAIR:AT1G68870.1); Has 495 Blast hits to 457 proteins in 104 species: Archae - 0; Bacteria - 20; Metazoa - 127; Fungi - 76; Plants - 112; Viruses - 7; Other Eukaryotes - 153 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUZSeggNOG:ENOG41106DAEMBL:AK175479EMBL:AK176501EMBL:BT024679EMBL:CP002684EnsemblPlants:AT1G26210
EnsemblPlants:AT1G26210.1entrez:839162GeneID:839162GO:GO:0009690Gramene:AT1G26210.1hmmpanther:PTHR33347hmmpanther:PTHR33347:SF6
KEGG:ath:AT1G26210OMA:MYIEDAFPhylomeDB:Q67YG7Proteomes:UP000006548RefSeq:NP_564241.1STRING:3702.AT1G26210.1TAIR:AT1G26210
tair10-symbols:ATSOFL1tair10-symbols:SOFL1UniGene:At.47526UniGene:At.62072UniProt:Q67YG7
Coordinates (TAIR10) chr1:+:9067524..9067970
Molecular Weight (calculated) 16249.80 Da
IEP (calculated) 4.37
GRAVY (calculated) -1.48
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MESPRNHGGS EEEEYSSCES GWTMYIEDAF HGNDQSSVVV DDDDDDTQVK EADDGYENDD GDTSDDGGDE ESDDSMASDA SSGPSNQLPK HINKHAARKN
101: GSKQVYLQKR QHTEKTISNE GEKSDLKART RTSAASRVQS RGKVSKTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)