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AT1G25530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.830
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transmembrane amino acid transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine histidine transporter 1 (TAIR:AT5G40780.1); Has 3229 Blast hits to 3219 proteins in 255 species: Archae - 4; Bacteria - 28; Metazoa - 882; Fungi - 529; Plants - 1538; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0814eggNOG:KOG1303EMBL:AC079281EMBL:AK226595EMBL:BT022015EMBL:CP002684EnsemblPlants:AT1G25530
EnsemblPlants:AT1G25530.1entrez:839139GeneID:839139Genevisible:Q9C6M2GO:GO:0005886GO:GO:0006865GO:GO:0016021
Gramene:AT1G25530.1hmmpanther:PTHR22950hmmpanther:PTHR22950:SF327HOGENOM:HOG000241295InParanoid:Q9C6M2InterPro:IPR013057KEGG:ath:AT1G25530
OMA:CNIVYMVPaxDb:Q9C6M2Pfam:PF01490Pfam:Q9C6M2PhylomeDB:Q9C6M2PIR:F86385PRIDE:Q9C6M2
PRO:PR:Q9C6M2ProteinModelPortal:Q9C6M2Proteomes:UP000006548RefSeq:NP_173924.1STRING:3702.AT1G25530.1TAIR:AT1G25530TMHMM:TMhelix
UniGene:At.17316UniGene:At.41322UniProt:Q9C6M2
Coordinates (TAIR10) chr1:-:8964827..8967391
Molecular Weight (calculated) 48818.80 Da
IEP (calculated) 8.97
GRAVY (calculated) 0.48
Length 440 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSSSPVSPS KETDRKSGEK WTAEDPSRPA KWWYSTFHTV TAMIGAGVLS LPYAMAYLGW GPGTFVLAMT WGLTLNTMWQ MVQLHECVPG TRFDRYIDLG
101: RYAFGPKLGP WIVLPQQLIV QVGCNIVYMV TGGKCLKQFV EITCSTCTPV RQSYWILGFG GVHFILSQLP NFNSVAGVSL AAAVMSLCYS TIAWGGSIAH
201: GRVPDVSYDY KATNPGDFTF RVFNALGQIS FAFAGHAVAL EIQATMPSTP ERPSKVPMWQ GVIGAYVVNA VCYFPVALIC YWAFGQDVDD NVLMNLQRPA
301: WLIAAANLMV VVHVIGSYQV FAMPVFDLLE RMMVNKFGFK HGVVLRFFTR TIYVAFTLFI GVSFPFFGDL LGFFGGFGFA PTSFFLPSIM WLIIKKPRRF
401: SVTWFVNWIS IIVGVFIMLA STIGGLRNII ADSSTYSFYA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)