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AT1G25510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G18490.1); Has 4139 Blast hits to 4120 proteins in 342 species: Archae - 0; Bacteria - 0; Metazoa - 1183; Fungi - 740; Plants - 2035; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G25510-MONOMEReggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:AC079281EMBL:AK228512EMBL:AY099724EMBL:BT000294
EMBL:CP002684EnsemblPlants:AT1G25510EnsemblPlants:AT1G25510.1entrez:839137Gene3D:2.40.70.10GeneID:839137GO:GO:0004190
Gramene:AT1G25510.1hmmpanther:PTHR13683hmmpanther:PTHR13683:SF274HOGENOM:HOG000237482InterPro:IPR001461InterPro:IPR021109InterPro:IPR032799
InterPro:IPR032861InterPro:IPR033121KEGG:ath:AT1G25510MEROPS:A01.A06OMA:VSECRNAPANTHER:PTHR13683Pfam:PF14541
Pfam:PF14543Pfscan:PS51767PhylomeDB:Q9C6M0PIR:D86385PROSITE:PS51767Proteomes:UP000006548RefSeq:NP_173922.1
SMR:Q9C6M0STRING:3702.AT1G25510.1SUPFAM:SSF50630TAIR:AT1G25510UniGene:At.41326UniProt:Q9C6M0
Coordinates (TAIR10) chr1:-:8959372..8960823
Molecular Weight (calculated) 51993.10 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.02
Length 483 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPNYSFFFF IFFLTSHSSV FSRILPETST TTTSILNVAD SIHRTKYTSS FRLNQQEEQT HSASSSFSLQ LHSRVSVRGT EHSDYKSLTL ARLNRDTARV
101: KSLITRLDLA INNISKADLK PISTMYTTEE QDIEAPLISG TTQGSGEYFT RVGIGKPARE VYMVLDTGSD VNWLQCTPCA DCYHQTEPIF EPSSSSSYEP
201: LSCDTPQCNA LEVSECRNAT CLYEVSYGDG SYTVGDFATE TLTIGSTLVQ NVAVGCGHSN EGLFVGAAGL LGLGGGLLAL PSQLNTTSFS YCLVDRDSDS
301: ASTVDFGTSL SPDAVVAPLL RNHQLDTFYY LGLTGISVGG ELLQIPQSSF EMDESGSGGI IIDSGTAVTR LQTEIYNSLR DSFVKGTLDL EKAAGVAMFD
401: TCYNLSAKTT VEVPTVAFHF PGGKMLALPA KNYMIPVDSV GTFCLAFAPT ASSLAIIGNV QQQGTRVTFD LANSLIGFSS NKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)