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AT1G25490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem
Computational
Description (TAIR10)
ROOTS CURL IN NPA (RCN1); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: response to ethylene stimulus, abscisic acid mediated signaling pathway, regulation of stomatal movement, positive regulation of abscisic acid mediated signaling pathway, auxin polar transport; LOCATED IN: cell wall, plasma membrane, protein phosphatase type 2A complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A2 (TAIR:AT3G25800.1); Has 2785 Blast hits to 1557 proteins in 250 species: Archae - 15; Bacteria - 74; Metazoa - 1400; Fungi - 416; Plants - 342; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink).
Protein Annotations
BioGrid:24372eggNOG:ENOG410XQVIeggNOG:KOG0211EMBL:AC079281EMBL:AK220793EMBL:AK222057EMBL:AY120757
EMBL:BT000108EMBL:CP002684EMBL:U21557EMBL:U27299EMBL:X82001EnsemblPlants:AT1G25490EnsemblPlants:AT1G25490.1
entrez:839135Gene3D:1.25.10.10GeneID:839135Genevisible:Q38845GO:GO:0000159GO:GO:0005618GO:GO:0005634
GO:GO:0005886GO:GO:0008601GO:GO:0009723GO:GO:0009734GO:GO:0009738GO:GO:0009789GO:GO:0009873
GO:GO:0009926GO:GO:0010119GO:GO:0034047GO:GO:0035304Gramene:AT1G25490.1hmmpanther:PTHR10648hmmpanther:PTHR10648:SF11
HOGENOM:HOG000078539InParanoid:Q38845IntAct:Q38845InterPro:IPR000357InterPro:IPR011989InterPro:IPR016024InterPro:IPR021133
iPTMnet:Q38845KEGG:ath:AT1G25490KO:K03456OMA:TELRATYPaxDb:Q38845Pfam:PF02985Pfam:PF13646
Pfam:Q38845Pfscan:PS50077PhylomeDB:Q38845PIR:B86385PIR:S51807PIR:S69215PRIDE:Q38845
PRO:PR:Q38845PROSITE:PS50077ProteinModelPortal:Q38845Proteomes:UP000006548Reactome:R-ATH-113501Reactome:R-ATH-198753Reactome:R-ATH-202670
Reactome:R-ATH-69231Reactome:R-ATH-975957RefSeq:NP_173920.1SMR:Q38845STRING:3702.AT1G25490.1SUPFAM:SSF48371TAIR:AT1G25490
tair10-symbols:ATB BETA BETAtair10-symbols:EER1tair10-symbols:RCN1tair10-symbols:REGAUniGene:At.160UniProt:Q38845
Coordinates (TAIR10) chr1:+:8951700..8954899
Molecular Weight (calculated) 65497.90 Da
IEP (calculated) 4.69
GRAVY (calculated) 0.14
Length 588 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMVDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENSDDD DEVLLAMAEE LGVFIPFVGG IEFAHVLLPP LESLCTVEET
101: CVREKAVESL CKIGSQMKEN DLVESFVPLV KRLAGGEWFA ARVSACGIFH VAYQGCTDVL KTELRATYSQ LCKDDMPMVR RAAASNLGKF ATTVESTFLI
201: AEIMTMFDDL TKDDQDSVRL LAVEGCAALG KLLEPQDCVA RILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPDCTRTD LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRL LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPIL GKDSTIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY VPLLASQLGI GFFDDKLGAL CMQWLQDKVY SIREAAANNL KRLAEEFGPE WAMQHLVPQV LDMVNNPHYL HRMMVLRAIS
501: LMAPVMGSEI TCSKFLPVVV EASKDRVPNI KFNVAKLLQS LIPIVDQSVV DKTIRQCLVD LSEDPDVDVR YFANQALNSI DGSTAAQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)