AT1G25460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.732 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, root, leaf; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G68540.1); Has 11038 Blast hits to 11020 proteins in 1988 species: Archae - 277; Bacteria - 4442; Metazoa - 226; Fungi - 896; Plants - 2479; Viruses - 33; Other Eukaryotes - 2685 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8942811..8944244 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35957.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.99 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||
| Length | 320 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEYLVTGGT SFIASHVIKS LLEFGHYVRT TVRDSEDEEK VGFLWDLKGA KERLKIFEAD LTIEGSFDEA VNGVDGVFHI ASRVSVRLDN NNLDKFDPNI 101: SGTMNVMNSC AKSRNTVKRI VLTSSSTAIR YRFDATQVSP LNESHWTDLE YCKHFKIWYA YKKTLGEKEA WRIAADKKLN LVVVIPSFCI GPILSPKPTS 201: SPLIFLSIIK GTRGTYPNFR GGFVHIDDVV AAQILAMEEP KASGRILCSS SVAHWSEIIE MLRIKYPLYP FETKCGSEEG KDMPHSLDTT KIHELGFASF 301: KSLTEMFDDC IKCFQDKGLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)