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AT1G25420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Regulator of Vps4 activity in the MVB pathway protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G34220.2); Has 638 Blast hits to 625 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 157; Plants - 289; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YG52eggNOG:KOG2027EMBL:AC079281EMBL:AY095990EMBL:AY143866EMBL:CP002684EnsemblPlants:AT1G25420
EnsemblPlants:AT1G25420.1entrez:839128ExpressionAtlas:Q9C6L2GeneID:839128GO:GO:0015031Gramene:AT1G25420.1hmmpanther:PTHR12161
hmmpanther:PTHR12161:SF5IntAct:Q9C6L2InterPro:IPR005061KEGG:ath:AT1G25420KO:K19476OMA:FMKSHEDPANTHER:PTHR12161
Pfam:PF03398PhylomeDB:Q9C6L2PIR:C86384Proteomes:UP000006548RefSeq:NP_564235.1SMR:Q9C6L2STRING:3702.AT1G25420.1
TAIR:AT1G25420UniGene:At.43165UniProt:Q9C6L2
Coordinates (TAIR10) chr1:+:8916141..8917980
Molecular Weight (calculated) 35815.30 Da
IEP (calculated) 9.39
GRAVY (calculated) -0.31
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLLNQLFNR GIFGAKCKTS LNLAIARMKL LQNKRDMQLK HMKKEIAHFL QAGQEPIARI RVEHVIREMN LWAAYEILEL FCEFILARVP ILESEKECPR
101: ELREAIASII FAAPRCSEVP DLLQIKNLFG TKYGKEFIMV ASELRPDSGV NRTIIEKLSP TSPSGAARLK MLKEIAQEYS LNWDSSATEA EFMKSHEDLL
201: GGAKQIHRQD GISESRPSQQ GYGQSSVSRE VESLPAEATQ RFQKLQAQNP VSKSMPSSKL TSAFQAPPDT RRNQTDVMEI ARAALASADR ATAAARAAAQ
301: LVNVSYGATT PTVAAEGKPL NLM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)