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AT1G25375.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:29967049 (2018): plastid
  • PMID:27943495 (2017): mitochondrion
  • PMID:24124904 (2013): plastid
  • PMID:22923678 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Metallo-hydrolase/oxidoreductase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Metallo-hydrolase/oxidoreductase superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); Has 5673 Blast hits to 5670 proteins in 1426 species: Archae - 148; Bacteria - 3668; Metazoa - 137; Fungi - 138; Plants - 124; Viruses - 0; Other Eukaryotes - 1458 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0491eggNOG:KOG0813EMBL:AK175321EMBL:CP002684
EnsemblPlants:AT1G25375EnsemblPlants:AT1G25375.1entrez:839123Gene3D:3.60.15.10
GeneID:839123GO:GO:0009536GO:GO:0016021GO:GO:0016787
Gramene:AT1G25375.1hmmpanther:PTHR23131hmmpanther:PTHR23131:SF2InterPro:IPR001279
KEGG:ath:AT1G25375OMA:WMSKECAPfam:PF00753PhylomeDB:Q682P6
PRO:PR:Q682P6Proteomes:UP000006548RefSeq:NP_564232.1SMART:SM00849
SMR:Q682P6STRING:3702.AT1G25375.1SUPFAM:SSF56281SwissPalm:Q682P6
TAIR:AT1G25375TMHMM:TMhelixUniGene:At.26271UniProt:Q682P6
Coordinates (TAIR10) chr1:-:8900279..8903220
Molecular Weight (calculated) 58070.00 Da
IEP (calculated) 7.00
GRAVY (calculated) -0.10
Length 524 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNLKLALII KSPRDDVEFL LEKQKQPAKF GDEAYDSFVD SDLWDLPSTD LQALEDGVRS GFSISILDSC SEEVDLMNFD FESTLILLLE NLGIDISDVG
101: EWRFVRSVEE PEFGPDSCVR TCFISGKLLN TDQSLQDNCK WMSMESCFDS LIDVKLGSDR VGPLVLLGLG DGSRQSMKHK LSSSLAIQEY PPGVMIVPMH
201: SKTLKPFRTT NLVVFAPENG LGDHQGADFV AHGDALIVDP GCLSKLHVEL KKIVDALPRK LIVFVTHHHR DHIDGLSAIQ ESNPDAILVA HAKTRHRIGG
301: WSGNYTPVSG GENIYVNGQK LTVIFAPGHT DGHMSLLHTS TQSLIVGDHC VGQGSAFLDI RAGGNMTDYF QSTYKFLELS PNVVIPMHGR VNLWPKHMLC
401: GYLKNRRSRE KSILKATVDG AQTLYDIVAK VYSSVDRKFW WAASSNVRLH IEKLAVENKL PEGFSIQKFK ASCGLRFAIR CTVGYIISKI PFKINKPGFI
501: MSVMAAGAGY FLLYTSKKKN QIES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)