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AT1G25350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ovule abortion 9 (OVA9); FUNCTIONS IN: glutamine-tRNA ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation, ovule development; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 1 (InterPro:IPR007639), Glutamyl/glutaminyl-tRNA synthetase, class Ic, N-terminal (InterPro:IPR020060), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 2 (InterPro:IPR007638), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutaminyl-tRNA synthetase, class Ic (InterPro:IPR004514), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (TAIR:AT5G19720.1); Has 13124 Blast hits to 13109 proteins in 2954 species: Archae - 262; Bacteria - 8524; Metazoa - 443; Fungi - 410; Plants - 177; Viruses - 0; Other Eukaryotes - 3308 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G25350-MONOMERBioCyc:ARA:GQT-2057-MONOMEREC:6.1.1.18eggNOG:COG0008
eggNOG:KOG1148EMBL:AC079374EMBL:AY062594EMBL:AY114653
EMBL:CP002684EnsemblPlants:AT1G25350EnsemblPlants:AT1G25350.1entrez:839120
ExpressionAtlas:Q8W4F3Gene3D:1.10.1160.10Gene3D:2.40.240.10Gene3D:3.40.50.620
GeneID:839120Genevisible:Q8W4F3GO:GO:0004819GO:GO:0005524
GO:GO:0005829GO:GO:0006425gramene_pathway:6.1.1.18gramene_pathway:TRNA-CHARGING-PWY
hmmpanther:PTHR11451hmmpanther:PTHR11451:SF24HOGENOM:HOG000259233InterPro:IPR000924
InterPro:IPR001412InterPro:IPR004514InterPro:IPR007638InterPro:IPR007639
InterPro:IPR011035InterPro:IPR014729InterPro:IPR020056InterPro:IPR020058
InterPro:IPR020059InterPro:IPR020061KEGG:00860+6.1.1.17KEGG:00970+6.1.1.17
PaxDb:Q8W4F3Pfam:PF00749Pfam:PF03950Pfam:PF04557
Pfam:PF04558PhylomeDB:Q8W4F3PIR:D86381PRIDE:Q8W4F3
PRINTS:PR00987PRO:PR:Q8W4F3PROSITE:PS00178ProteinModelPortal:Q8W4F3
Proteomes:UP000006548RefSeq:NP_173906.2scanprosite:PS00178SMR:Q8W4F3
STRING:3702.AT1G25350.2SUPFAM:SSF50715SUPFAM:SSF52374TAIR:AT1G25350
tair10-symbols:OVA9TIGRfam:TIGR00440TIGRFAMs:TIGR00440UniGene:At.22997
UniProt:Q8W4F3
Coordinates (TAIR10) chr1:-:8889280..8894205
Molecular Weight (calculated) 91251.50 Da
IEP (calculated) 6.48
GRAVY (calculated) -0.56
Length 795 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLKDDNSEK SIELFISIGL DEKTARNTIN NNKVTANLTA VIHEAAVTDG CDRNTGNLLY SVATKFPTNA LVHRPTLLKY IVNSKIKTPA QLEAAFAFFA
101: STGPEDFKLN EFEEACGVGI EVSPEDIEKA VKGIFEENKK TILEQRYRTN VGELFGHVRK SLPWADPKIV KKLIDEKMYE LLGEKTAADN EKPTKKKEKK
201: EKPAKVEEKK AVVETTAEPS EEELNPYTIF PQPEQNFMVH TEVFFSDGSI LRCSNTKEVL DKHLKVTGGK VYTRFPPEPN GYLHIGHAKA MFVDFGLAKE
301: RGGCCYLRYD DTNPEAEKEE YINHIEEIVK WMGWEPFKIT YTSDYFQELY DLAVELIRRG HAYVDHQTAD EIKEYREKKM NSPWRDRPIE ESLKLFDEMR
401: RGIIEEGKAT LRMKQDMQSD NFNMYDLIAY RIKFAPHPKA GDKWCIYPSY DYAHCTVDSL ENITHSLCTL EFETRRASYY WLLHSLSLYM PYVWEYSRLN
501: VTNTVMSKRK LNYIVTNKYV DGWDDPRLLT LSGLRRRGVT STAINAFVRG IGITRSDGSM IHVSRLEHHI REELNKTAPR TMVVLNPLKV VITNLESDKL
601: IELDAKRWPD AQNDDPSAFY KVPFSRVVYI DQSDFRMKDS KDYYGLAPGK SVLLRYAFPI KCTNVVFADD NETVREIHAE YDPEKKSKPK GVLHWVAESS
701: PGEEPIKVEV RLFEKLFNSE NPAELNDAWL TDINPNSKMV ISGAYAVSTL KDAAVGDRFQ FERLGYYAVD KDSEPGKLVF NRTVTLRDSY GKGGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)