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AT1G25270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G68170.1); Has 2335 Blast hits to 2323 proteins in 458 species: Archae - 9; Bacteria - 937; Metazoa - 4; Fungi - 9; Plants - 1230; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE84eggNOG:ENOG410YFQGEMBL:AC079374EMBL:CP002684
EMBL:DQ056463EnsemblPlants:AT1G25270EnsemblPlants:AT1G25270.1entrez:839110
GeneID:839110Genevisible:Q4PT23GO:GO:0005886GO:GO:0006810
GO:GO:0016021GO:GO:0022857GO:GO:0055085Gramene:AT1G25270.1
hmmpanther:PTHR31218hmmpanther:PTHR31218:SF7HOGENOM:HOG000237441InParanoid:Q4PT23
InterPro:IPR000620InterPro:IPR030184KEGG:ath:AT1G25270OMA:TFYKGAD
PANTHER:PTHR31218PaxDb:Q4PT23Pfam:PF00892Pfam:Q4PT23
PhylomeDB:Q4PT23PRO:PR:Q4PT23ProteinModelPortal:Q4PT23Proteomes:UP000006548
RefSeq:NP_173898.2SUPFAM:0043518TAIR:AT1G25270TCDB:2.A.7.4.2
TMHMM:TMhelixUniGene:At.51763UniProt:Q4PT23
Coordinates (TAIR10) chr1:+:8857726..8859909
Molecular Weight (calculated) 38578.30 Da
IEP (calculated) 9.60
GRAVY (calculated) 0.70
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSVVAMVAV QFIFAGMFIL FKITVDDGTN LKVLVAYRLS FATIFMLPLA LIFQRKKRPE FTWRLLLLAF VSGLLGAAIP NILYLPGMAR TSATFSAASS
101: IISPLITLVL GLVFRMETLR LGSNEGRAKL VGTLLGACGA LVFVFYKGIE IHIWSTHVDL LKGSHTGRAT TNHHVSILGV LMVLGSNVST SLWLLLQAKI
201: GKELGGLYWN TSLMNGVGSL VCVIIALCSD HDWEQWQLGW DINLLATLYS GIVVSGMVVP LVAWCIATKG PLFVTVFSPI RLVIVALIGS FALEEPLHLG
301: SIIGAMIMVG GVYLVVWCKM KEKKSASTTS DHIETNKNNK ELDLGNLSSV NRDVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)