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AT1G25260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein L10 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G11250.1); Has 1099 Blast hits to 1097 proteins in 339 species: Archae - 116; Bacteria - 0; Metazoa - 360; Fungi - 259; Plants - 172; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0244eggNOG:KOG0816EMBL:AY045969EMBL:AY079322EMBL:AY088374EMBL:CP002684EnsemblPlants:AT1G25260
EnsemblPlants:AT1G25260.1entrez:839109GeneID:839109GO:GO:0005829GO:GO:0022626GO:GO:0042254Gramene:AT1G25260.1
hmmpanther:PTHR21141hmmpanther:PTHR21141:SF37HOGENOM:HOG000177263IntAct:Q94AK8InterPro:IPR001790KEGG:ath:AT1G25260KO:K14815
OMA:IKCMWNSPfam:PF00466PhylomeDB:Q94AK8Proteomes:UP000006548RefSeq:NP_564226.1SMR:Q94AK8STRING:3702.AT1G25260.1
SUPFAM:0053665TAIR:AT1G25260UniGene:At.21571UniProt:Q94AK8
Coordinates (TAIR10) chr1:-:8854163..8855766
Molecular Weight (calculated) 27243.90 Da
IEP (calculated) 8.45
GRAVY (calculated) -0.55
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)