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AT1G24625.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger protein 7
Curator
Summary (TAIR10)
Encodes a zinc finger protein containing only a single zinc finger.
Computational
Description (TAIR10)
zinc finger protein 7 (ZFP7); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 4 (TAIR:AT1G66140.1); Has 1014 Blast hits to 1014 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1011; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXU1eggNOG:ENOG410YNPPEMBL:AK119018EMBL:BT005629EnsemblPlants:AT1G24625EnsemblPlants:AT1G24625.1entrez:839077
ExpressionAtlas:Q541V6GeneID:839077GO:GO:0046872Gramene:AT1G24625.1HOGENOM:HOG000239894InterPro:IPR007087KEGG:ath:AT1G24625
OMA:HMGRMFGPaxDb:Q541V6Pfam:Q39266Pfscan:PS50157PhylomeDB:Q541V6PRIDE:Q541V6PROSITE:PS00028
PROSITE:PS50157ProteinModelPortal:Q541V6RefSeq:NP_564223.1scanprosite:PS00028SMR:Q541V6STRING:3702.AT1G24625.1SUPFAM:SSF57667
TAIR:AT1G24625tair10-symbols:ZFP7UniGene:At.1644UniProt:Q39266UniProt:Q541V6
Coordinates (TAIR10) chr1:-:8726009..8726638
Molecular Weight (calculated) 23167.70 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.74
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MTESDDASRE TPASRGGEAS SNQDLSKPES NHVSLDLKLN DTFNDDTKST KCEANPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)