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AT1G24620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.755
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EF hand calcium-binding protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G18210.2); Has 28159 Blast hits to 18576 proteins in 1591 species: Archae - 2; Bacteria - 225; Metazoa - 10723; Fungi - 6999; Plants - 5954; Viruses - 2; Other Eukaryotes - 4254 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0027EMBL:AC000103EMBL:CP002684EMBL:DQ446288EnsemblPlants:AT1G24620EnsemblPlants:AT1G24620.1
entrez:839076Gene3D:1.10.238.10GeneID:839076Genevisible:Q9FYK2GO:GO:0005509GO:GO:0005634GO:GO:0005737
GO:GO:0009409GO:GO:0048767Gramene:AT1G24620.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF605HOGENOM:HOG000233018InParanoid:Q9FYK2
InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT1G24620KO:K13448OMA:NKFDINGPaxDb:Q9FYK2
Pfam:PF13499Pfam:Q9FYK2Pfscan:PS50222PhylomeDB:Q9FYK2PIR:F86379PRIDE:Q9FYK2PRO:PR:Q9FYK2
PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q9FYK2Proteomes:UP000006548RefSeq:NP_173866.1scanprosite:PS00018SMART:SM00054
SMR:Q9FYK2STRING:3702.AT1G24620.1SUPFAM:SSF47473TAIR:AT1G24620UniGene:At.51279UniProt:Q9FYK2
Coordinates (TAIR10) chr1:-:8723893..8724453
Molecular Weight (calculated) 20301.70 Da
IEP (calculated) 4.29
GRAVY (calculated) -0.60
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MFNKNQGSNG GSSSNVGIGA DSPYLQKARS GKTEIRELEA VFKKFDVNGD GKISSKELGA IMTSLGHEVP EEELEKAITE IDRKGDGYIN FEEFVELNTK
101: GMDQNDVLEN LKDAFSVYDI DGNGSISAEE LHEVLRSLGD ECSIAECRKM IGGVDKDGDG TIDFEEFKIM MTMGSRRDNV MGGGPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)