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AT1G24450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribonuclease III family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NUCLEAR FUSION DEFECTIVE 2 (NFD2); FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); Has 2124 Blast hits to 2124 proteins in 820 species: Archae - 3; Bacteria - 1583; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 509 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX2EeggNOG:ENOG410YN9YEMBL:AC000103EMBL:AY045598EMBL:AY094027EMBL:CP002684EnsemblPlants:AT1G24450
EnsemblPlants:AT1G24450.1entrez:839061Gene3D:1.10.1520.10GeneID:839061Genevisible:Q9FYL8GO:GO:0000741GO:GO:0003725
GO:GO:0004525GO:GO:0005773GO:GO:0006396GO:GO:0010197GO:GO:0090502Gramene:AT1G24450.1hmmpanther:PTHR11207
HOGENOM:HOG000077389InterPro:IPR000999KEGG:ath:AT1G24450OMA:VFWKVHGPaxDb:Q9FYL8Pfam:PF14622Pfam:Q9FYL8
Pfscan:PS50142PhylomeDB:Q9FYL8PRIDE:Q9FYL8PRO:PR:Q9FYL8PROSITE:PS50142ProteinModelPortal:Q9FYL8Proteomes:UP000006548
RefSeq:NP_173854.1SMART:SM00535SMR:Q9FYL8STRING:3702.AT1G24450.1SUPFAM:SSF69065TAIR:AT1G24450tair10-symbols:NFD2
TMHMM:TMhelixUniGene:At.15895UniProt:Q9FYL8
Coordinates (TAIR10) chr1:+:8664201..8665077
Molecular Weight (calculated) 20743.30 Da
IEP (calculated) 10.11
GRAVY (calculated) 0.39
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLRFTLLL LVFVVGIFFS FSSVSHVRAT SEINLRIEPF SSPFATDLAK LQTQIGYKFN NINLLRRAMT HASFSQENNK ALSIFGTHII ETAVSLQFLA
101: KDIDISSKAL GRLISEVSNV ESSCALDGDR LGLGKIIRVS TKTDASNSAI LCTGFRAIFG AIAIDAGTVD EAIKVFWKVH GARAGRLVSM L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)