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AT1G24360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: 3-oxoacyl-[acyl-carrier-protein] reductase activity, copper ion binding; INVOLVED IN: oxidation reduction, metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxoacyl-(acyl-carrier-protein) reductase (InterPro:IPR011284), Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29370.1); Has 133396 Blast hits to 132816 proteins in 3924 species: Archae - 1008; Bacteria - 83642; Metazoa - 7884; Fungi - 7548; Plants - 3127; Viruses - 5; Other Eukaryotes - 30182 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G24360-MONOMERBioCyc:MetaCyc:AT1G24360-MONOMEREC:1.1.1.100eggNOG:COG1028eggNOG:KOG1200EMBL:AC000103EMBL:AC002396
EMBL:AF324985EMBL:AY059816EMBL:AY081491EMBL:CP002684EMBL:X64464EnsemblPlants:AT1G24360EnsemblPlants:AT1G24360.1
entrez:839053Gene3D:3.40.50.720GeneID:839053Genevisible:P33207GO:GO:0004316GO:GO:0005507GO:GO:0006633
GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009941GO:GO:0051287Gramene:AT1G24360.1gramene_pathway:1.1.1.100
gramene_pathway:FASYN-ELONG-PWYgramene_pathway:PWY-5971gramene_pathway:PWY-5973gramene_pathway:PWY-5989hmmpanther:PTHR24322hmmpanther:PTHR24322:SF619InParanoid:P33207
InterPro:IPR002347InterPro:IPR011284InterPro:IPR016040InterPro:IPR020904KEGG:00061+1.1.1.100KEGG:00780+1.1.1.100KEGG:ath:AT1G24360
KO:K00059OMA:ANACLFFPANTHER:PTHR24322PaxDb:P33207Pfam:P33207Pfam:PF00106PhylomeDB:P33207
PIR:A86378PIR:S22416PIR:T00667PRIDE:P33207PRINTS:PR00080PRINTS:PR00081PRO:PR:P33207
PROSITE:PS00061ProteinModelPortal:P33207Proteomes:UP000006548RefSeq:NP_564216.1scanprosite:PS00061SMR:P33207STRING:3702.AT1G24360.1
SUPFAM:SSF51735TAIR:AT1G24360TIGRfam:TIGR01830TIGRFAMs:TIGR01830UniGene:At.4UniGene:At.67665UniPathway:UPA00094
UniProt:P33207
Coordinates (TAIR10) chr1:+:8640820..8643283
Molecular Weight (calculated) 33550.10 Da
IEP (calculated) 9.99
GRAVY (calculated) 0.21
Length 319 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAVAAPRL ISLKAVAKLG FREISQIRQL APLHSAIPHF GMLRCRSRQP FSTSVVKAQA TATEQSPGEV VQKVESPVVV ITGASRGIGK AIALALGKAG
101: CKVLVNYARS AKEAEEVAKQ IEEYGGQAIT FGGDVSKATD VDAMMKTALD KWGTIDVVVN NAGITRDTLL IRMKQSQWDE VIALNLTGVF LCTQAAVKIM
201: MKKKRGRIIN ISSVVGLIGN IGQANYAAAK GGVISFSKTA AREGASRNIN VNVVCPGFIA SDMTAELGED MEKKILGTIP LGRYGKAEEV AGLVEFLALS
301: PAASYITGQA FTIDGGIAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)