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AT1G24290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.847
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AAA-type ATPase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), ATPase, AAA-type, core (InterPro:IPR003959), MgsA AAA+ ATPase C-terminal (InterPro:IPR021886), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: replication factor C subunit 3 (TAIR:AT1G77470.1); Has 22422 Blast hits to 22383 proteins in 2992 species: Archae - 614; Bacteria - 15728; Metazoa - 553; Fungi - 700; Plants - 273; Viruses - 62; Other Eukaryotes - 4492 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2256eggNOG:KOG2028EMBL:AC002396EMBL:CP002684EnsemblPlants:AT1G24290EnsemblPlants:AT1G24290.1entrez:839045
Gene3D:3.40.50.300GeneID:839045GO:GO:0003677GO:GO:0005524GO:GO:0006260Gramene:AT1G24290.1hmmpanther:PTHR13779
hmmpanther:PTHR13779:SF7HOGENOM:HOG000017623InterPro:IPR003593InterPro:IPR003959InterPro:IPR008921InterPro:IPR009060InterPro:IPR015940
InterPro:IPR021886InterPro:IPR027417InterPro:IPR032423KEGG:ath:AT1G24290KO:K07478OMA:QHYNLISPfam:PF00004
Pfam:PF00627Pfam:PF12002Pfam:PF16193Pfscan:PS50030PhylomeDB:O48696PIR:T00660PROSITE:PS50030
Proteomes:UP000006548RefSeq:NP_173839.1SMART:SM00165SMART:SM00382SMR:O48696STRING:3702.AT1G24290.1SUPFAM:SSF46934
SUPFAM:SSF48019SUPFAM:SSF52540TAIR:AT1G24290UniGene:At.41453UniGene:At.63976UniProt:O48696
Coordinates (TAIR10) chr1:-:8612650..8614227
Molecular Weight (calculated) 57399.20 Da
IEP (calculated) 7.15
GRAVY (calculated) -0.32
Length 525 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQLVSMGFS SDLAAEALTA TGGDSIQKAT DWILSHRSSP QSTATLQPKL DRFLRLHPKA LAPAMGDDSS KRPNPKTQIH VAADDSNKRH KLSSSSHRQH
101: QPLSERMRPR TLDDVVGQDH LLSPSSLLRS AVESNRLPSI VFWGPPGTGK TSIAKSLINS SKDPSLYRFV SLSAVTSGVK DVRDAVESAK RLNLEGRKRT
201: VLFMDEVHRF NKSQQDTFLP VIEDGSILFI GATTENPSFH LITPLLSRCR VLTLNPLKPN HVETLLRRAV DDSERGLPNS VEVDDSVIEF LANNCDGDAR
301: VALNALEISA TMATTRAGTD AVVSIDDAKE ALQCKHLAYD KAGEQHYNLI SALHKSMRGG DANAAIYWLA RMLEGGEEPL YIARRLIRFA SEDIGLADPS
401: ALTQAVACYQ ASHFLGMPEC NVILAQCTAY LALAPKSIAV YRAIGAAQKV VKDSVGQNEG VPLHLRNAPT KLMKELGYGK EYIYPPSDPS SAAGQTYLPP
501: SLLHHKFLEW PEGASGDFQD QEHRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)