AT1G24150.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.835 What is SUBAcon? |
|
||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||
| Description (TAIR10) | protein_coding : formin homologue 4 | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin. | ||||||||||||
| Computational Description (TAIR10) |
formin homologue 4 (FH4); FUNCTIONS IN: actin binding, protein binding; INVOLVED IN: actin filament polymerization; LOCATED IN: cell-cell junction, plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin 8 (TAIR:AT1G70140.1); Has 28239 Blast hits to 15205 proteins in 945 species: Archae - 44; Bacteria - 3418; Metazoa - 10057; Fungi - 3019; Plants - 7022; Viruses - 1317; Other Eukaryotes - 3362 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr1:+:8549518..8551910 | ||||||||||||
| Molecular Weight (calculated) | 80059.40 Da | ||||||||||||
| IEP (calculated) | 9.68 | ||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||
| Length | 725 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAMLMQPWP PFLPHLTLVF LTLILFFPNQ SFSQSDSPRN IETFFPNDTI TPPVQSPVLS PPQNPSSSSS DSDRGNILRA VLITAASTLL VAAVFFFLVH 101: KCRRRRNRVG GVDNTLQPPV PPLAEAALAR EGFTRFGGNV KGLILDENGL DVLYWRKLQQ SQRDNKGGSF RKEIIHGDDE EKNVIYSKSK KKSGPVTETP 201: LLRGRSSTSH SVIHNDNYRN ATTTHPPHVK TDSFEFVKPD PTPPPPPPPP IPVKQSATPP PPPPPKLKNN GPSPPPPPPL KKTAALSSSA SKKPPPAPRG 301: SSSGESSNGQ VKLKPLHWDK VNPDSDHSMV WDKIDRGSFS FDGDLMEALF GYVAVGKKSP DDGGDKKPSS ASPAQIFILD PRKSQNTAIV LKSLGMTRDE 401: LVESLMEGHD FHPDTLERLS RIAPTKEEQS AILQFDGDTK MLADAESFLF HLLKAVPCAF TRLNALLFRA NYYPEISNHN KNLQTLDLAC TELRSRGLFS 501: VDGKTTLLNF VVEEVVRSEG KRCVLNRRTN RSFSRSSSSS ISEVISKEEQ EKEYLRLGLP VVGGLSSEFT NVKKAAAVDY DTVAATCLAL TSRAKDARRV 601: LAQSEGDNKE GVRFVKKMNE FLDSVEEEVK LAKEEEKKVL ELVKRTTEYY QAGAVKGKNP LHLFVIVRDF LAMVDKVCVE IARNLQRRSS MGSTQQRNAV 701: KFPVLPPNFM SDRSRSDSGG SDSDM |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)