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AT1G24140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.988
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Matrixin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: matrix metalloproteinase (TAIR:AT1G70170.1); Has 2621 Blast hits to 2428 proteins in 195 species: Archae - 3; Bacteria - 89; Metazoa - 2200; Fungi - 4; Plants - 185; Viruses - 42; Other Eukaryotes - 98 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G24140-MONOMEREC:3.4.24.-eggNOG:ENOG410XQ5DeggNOG:KOG1565EMBL:AC002396EMBL:BT015765EMBL:CP002684
EnsemblPlants:AT1G24140EnsemblPlants:AT1G24140.1entrez:839026Gene3D:3.40.390.10GeneID:839026Genevisible:Q5XF51GO:GO:0004222
GO:GO:0005886GO:GO:0008270GO:GO:0031012GO:GO:0031225Gramene:AT1G24140.1hmmpanther:PTHR10201hmmpanther:PTHR10201:SF140
HOGENOM:HOG000239471InParanoid:Q5XF51InterPro:IPR001818InterPro:IPR002477InterPro:IPR006026InterPro:IPR021158InterPro:IPR021190
InterPro:IPR024079KEGG:ath:AT1G24140MEROPS:M10.A05ncoils:CoilOMA:NAVEMYQPaxDb:Q5XF51Pfam:PF00413
Pfam:PF01471PhylomeDB:Q5XF51PIR:T00643PRIDE:Q5XF51PRINTS:PR00138PRO:PR:Q5XF51PROSITE:PS00546
ProteinModelPortal:Q5XF51Proteomes:UP000006548Reactome:R-ATH-1592389RefSeq:NP_173824.2scanprosite:PS00546SMART:SM00235SMR:Q5XF51
STRING:3702.AT1G24140.1SUPFAM:SSF47090SUPFAM:SSF55486TAIR:AT1G24140UniGene:At.41476UniProt:Q5XF51
Coordinates (TAIR10) chr1:-:8536131..8537285
Molecular Weight (calculated) 43019.50 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.30
Length 384 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRICVFMVF LLFFAPSPVS AGFYTNSSAI PPQLLRNATG NPWNSFLNFT GCHAGKKYDG LYMLKQYFQH FGYITETNLS GNFTDDFDDI LKNAVEMYQR
101: NFQLNVTGVL DELTLKHVVI PRCGNPDVVN GTSTMHSGRK TFEVSFAGRG QRFHAVKHYS FFPGEPRWPR NRRDLTYAFD PRNALTEEVK SVFSRAFTRW
201: EEVTPLTFTR VERFSTSDIS IGFYSGEHGD GEPFDGPMRT LAHAFSPPTG HFHLDGEENW IVSGEGGDGF ISVSEAVDLE SVAVHEIGHL LGLGHSSVEG
301: SIMYPTIRTG RRKVDLTTDD VEGVQYLYGA NPNFNGSRSP PPSTQQRDTG DSGAPGRSDG SRSVLTNLLQ YYFWIIFGLF LYLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)