AT1G23870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.501 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : trehalose-phosphatase/synthase 9 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
trehalose-phosphatase/synthase 9 (TPS9); FUNCTIONS IN: transferase activity, transferring glycosyl groups, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphatase synthase S8 (TAIR:AT1G70290.1); Has 4900 Blast hits to 4828 proteins in 1062 species: Archae - 56; Bacteria - 2863; Metazoa - 236; Fungi - 655; Plants - 621; Viruses - 0; Other Eukaryotes - 469 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8432695..8435506 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98501.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 867 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSRSCANFL DLASWDLLDF PQTQRALPRV MTVPGIISEL DGGYSDGSSD VNSSNSSRER KIIVANMLPL QAKRDTETGQ WCFSWDEDSL LLQLRDGFSS 101: DTEFVYIGSL NADIGISEQE EVSHKLLLDF NCVPTFLPKE MQEKFYLGFC KHHLWPLFHY MLPMFPDHGD RFDRRLWQAY VSANKIFSDR VMEVINPEED 201: YVWIHDYHLM VLPTFLRKRF NRIKLGFFLH SPFPSSEIYR TLPVRDDLLR GLLNCDLIGF HTFDYARHFL SCCSRMLGLD YESKRGHIGL DYFGRTVFIK 301: ILPVGIHMGR LESVLNLPST AAKMKEIQEQ FKGKKLILGV DDMDIFKGIS LKLIAMERLF ETYWHMRGKL VLIQIVNPAR ATGKDVEEAK KETYSTAKRI 401: NERYGSAGYQ PVILIDRLVP RYEKTAYYAM ADCCLVNAVR DGMNLVPYKY IICRQGTPGM DKAMGISHDS ARTSMLVVSE FIGCSPSLSG AIRVNPWDVD 501: AVAEAVNLAL TMGETEKRLR HEKHYHYVST HDVGYWAKSF MQDLERACRE HYNKRCWGIG FGLSFRVLSL SPSFRKLSID HIVSTYRNTQ RRAIFLDYDG 601: TLVPESSIIK TPNAEVLSVL KSLCGDPKNT VFVVSGRGWE SLSDWLSPCE NLGIAAEHGY FIRWSSKKEW ETCYSSAEAE WKTMVEPVMR SYMDATDGST 701: IEYKESALVW HHQDADPDFG ACQAKELLDH LESVLANEPV VVKRGQHIVE VKPQGVSKGL AVEKVIHQMV EDGNPPDMVM CIGDDRSDED MFESILSTVT 801: NPDLPMPPEI FACTVGRKPS KAKYFLDDVS DVLKLLGGLA AATSSSKPEY QQQSSSLHTQ VAFESII |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)